RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 USP14P54578 494 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 MARSP56192 900 aaKnown RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 GPSM2P81274 684 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 UBXN1Q04323 297 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 STK4Q13043 487 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 MAPK8IP2Q13387 824 aaPredicted RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 ZCWPW2Q504Y3 356 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PPP4R3AQ6IN85 833 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 SLC51AQ86UW1 340 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 RASGRP4Q8TDF6 673 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 RPGRIP1Q96KN7 1286 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 EDEM3Q9BZQ6 932 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ATF5Q9Y2D1 282 aaPredicted RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 ATP8B3O60423 1300 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 CCDC194A0A1B0GVG4 234 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 KLRF2D3W0D1 207 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NKRFO15226 690 aaKnown RBP eCLIP4.32□□□□□ -1.72
RTN4-209ENST00000405240 COBLO75128 1261 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 ATP2B4P23634 1241 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 OAS2P29728 719 aaKnown RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 HOXD11P31277 338 aaPredicted RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 PSMD2Q13200 908 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NONOQ15233 471 aaKnown RBP eCLIP4.32□□□□□ -1.72
RTN4-209ENST00000405240 LRRC55Q6ZSA7 311 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 UNC13DQ70J99 1090 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 HDXQ7Z353 690 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 ZNF804AQ7Z570 1209 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NEK8Q86SG6 692 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 CABP7Q86V35 215 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 DZIP1Q86YF9 867 aaKnown RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 ANKRD20A12PQ8NF67 263 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 TUBGCP2Q9BSJ2 902 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 CD209Q9NNX6 404 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 PLAGL2Q9UPG8 496 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 SUGT1Q9Y2Z0 365 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 BHMG1C9JSJ3 638 aaPredicted RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 PSMA7O14818 248 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NPHP1O15259 732 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 CLSTN1O94985 981 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 TSPY3P0CV98 308 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 TSPY8P0CW00 308 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 TNFRSF8P28908 595 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 GNA11P29992 359 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NFIXQ14938 502 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 TEX35Q5T0J7 233 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 FAM114A1Q8IWE2 563 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 GUF1Q8N442 669 aaKnown RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 MMGT1Q8N4V1 131 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 CPLX3Q8WVH0 158 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 CRYGNQ8WXF5 182 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 BAP1Q92560 729 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 SYN2Q92777 582 aaPredicted RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 NUP88Q99567 741 aaPredicted RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 ZNF287Q9HBT7 754 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 ABCB6Q9NP58 842 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 AGPAT5Q9NUQ2 364 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 LUC7L2Q9Y383 392 aaKnown RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 CYP3A7-CYP3A51PA0A087WV96 503 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 FRMD3A2A2Y4 597 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 SMCO2A6NFE2 343 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 PRPF6O94906 941 aaKnown RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 ATXN8OSP0DMR3 200 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 PDHBP11177 359 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 PLCG2P16885 1265 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 CYP3A7P24462 503 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 VSNL1P62760 191 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 KRT83P78385 493 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 SEPT2Q15019 361 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 SMIM5Q71RC9 77 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NOA1Q8NC60 698 aaKnown RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 SLC44A5Q8NCS7 719 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 TGFBRAP1Q8WUH2 860 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 DNAJC19Q96DA6 116 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 SLF1Q9BQI6 1058 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 NHEJ1Q9H9Q4 299 aaPredicted RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 C6orf50Q9HD87 102 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 RIC8AQ9NPQ8 531 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 COL2A1P02458 1487 aaPredicted RBP4.32□□□□□ -1.72
RTN4-209ENST00000405240 MYH10P35580 1976 aa4.32□□□□□ -1.72
RTN4-209ENST00000405240 MYMKA6NI61 221 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 B4DLN1 442 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 PPP1R11O60927 126 aaPredicted RBP4.31□□□□□ -1.72
RTN4-209ENST00000405240 ZPR1O75312 459 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 TFRCP02786 760 aaKnown RBP4.31□□□□□ -1.72
RTN4-209ENST00000405240 ATP1A1P05023 1023 aaKnown RBP4.31□□□□□ -1.72
RTN4-209ENST00000405240 BTDP43251 543 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 VAV2P52735 878 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 ST5P78524 1137 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 STIM1Q13586 685 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 DIXDC1Q155Q3 683 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 ASPRV1Q53RT3 343 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 PRR5LQ6MZQ0 368 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 ZNF771Q7L3S4 317 aaPredicted RBP4.31□□□□□ -1.72
RTN4-209ENST00000405240 ZNF444Q8N0Y2 327 aaPredicted RBP4.31□□□□□ -1.72
RTN4-209ENST00000405240 PROM2Q8N271 834 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 EHBP1Q8NDI1 1231 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 RAD54LQ92698 747 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 CEP95Q96GE4 821 aa4.31□□□□□ -1.72
RTN4-209ENST00000405240 CNOT6LQ96LI5 555 aaKnown RBP4.31□□□□□ -1.72
RTN4-209ENST00000405240 CRAMP1Q96RY5 1269 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms