RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FOXD4L6Q3SYB3 417 aaPredicted RBP20.68■□□□□ 0.9
SDC1-203ENST00000403076 FOXD4L3Q6VB84 417 aaPredicted RBP20.68■□□□□ 0.9
SDC1-203ENST00000403076 BRAPQ7Z569 592 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 NOSTRINQ8IVI9 506 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 TMEM260Q9NX78 707 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 PCDHA6Q9UN73 950 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 PCDHA8Q9Y5H6 950 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 ATP6V1DQ9Y5K8 247 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 RNF207Q6ZRF8 634 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 KRT25Q7Z3Z0 450 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 MROH8Q9H579 483 aa20.68■□□□□ 0.9
SDC1-203ENST00000403076 SPDYE3A6NKU9 549 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 MEIS2O14770 477 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 MCTP2Q6DN12 878 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 PIK3AP1Q6ZUJ8 805 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 FCHSD1Q86WN1 690 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 TEX2Q8IWB9 1127 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 ANKRD35Q8N283 1001 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 SAMD3Q8N6K7 520 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 SHCBP1Q8NEM2 672 aa20.67■□□□□ 0.9
SDC1-203ENST00000403076 ADGRA2Q96PE1 1338 aa20.66■□□□□ 0.9
SDC1-203ENST00000403076 FOSP01100 380 aaPredicted RBP20.66■□□□□ 0.9
SDC1-203ENST00000403076 BCRP11274 1271 aa20.66■□□□□ 0.9
SDC1-203ENST00000403076 PGBD1Q96JS3 809 aa20.66■□□□□ 0.9
SDC1-203ENST00000403076 PORCNQ9H237 461 aa20.66■□□□□ 0.9
SDC1-203ENST00000403076 EFCC1Q9HA90 598 aa20.66■□□□□ 0.9
SDC1-203ENST00000403076 M0R2N6 131 aa20.65■□□□□ 0.9
SDC1-203ENST00000403076 PIK3CDO00329 1044 aa20.65■□□□□ 0.9
SDC1-203ENST00000403076 CLK2P49760 499 aaKnown RBP20.65■□□□□ 0.9
SDC1-203ENST00000403076 RPS6P62753 249 aaKnown RBP20.65■□□□□ 0.9
SDC1-203ENST00000403076 AP3B2Q13367 1082 aa20.65■□□□□ 0.9
SDC1-203ENST00000403076 BAATQ14032 418 aaPredicted RBP20.65■□□□□ 0.9
SDC1-203ENST00000403076 NONOQ15233 471 aaKnown RBP eCLIP20.65■□□□□ 0.9
SDC1-203ENST00000403076 FAM173BQ6P4H8 233 aa20.65■□□□□ 0.9
SDC1-203ENST00000403076 C17orf99Q6UX52 265 aa20.65■□□□□ 0.9
SDC1-203ENST00000403076 TNFRSF25Q93038 417 aa20.65■□□□□ 0.9
SDC1-203ENST00000403076 MAP3K20Q9NYL2 800 aaKnown RBP20.65■□□□□ 0.9
SDC1-203ENST00000403076 TRPA1O75762 1119 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 ATP2B1P20020 1258 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 HSD17B4P51659 736 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 KCTD2Q14681 263 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 NOM1Q5C9Z4 860 aaKnown RBP20.64■□□□□ 0.9
SDC1-203ENST00000403076 ANO3Q9BYT9 981 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 EHMT1Q9H9B1 1298 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 A1CFQ9NQ94 594 aaKnown RBP20.64■□□□□ 0.9
SDC1-203ENST00000403076 NOL7Q9UMY1 257 aaKnown RBP20.64■□□□□ 0.9
SDC1-203ENST00000403076 IVNS1ABPQ9Y6Y0 642 aa20.64■□□□□ 0.9
SDC1-203ENST00000403076 FAM205CA6NFA0 338 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 TBC1D8O95759 1140 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 EARS2Q5JPH6 523 aaKnown RBP20.63■□□□□ 0.89
SDC1-203ENST00000403076 MYSM1Q5VVJ2 828 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 SLC30A10Q6XR72 485 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 SYTL5Q8TDW5 730 aaPredicted RBP20.63■□□□□ 0.89
SDC1-203ENST00000403076 TNPO1Q92973 898 aaKnown RBP20.63■□□□□ 0.89
SDC1-203ENST00000403076 MMP19Q99542 508 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 MAF1Q9H063 256 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 R3HDMLQ9H3Y0 253 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 RNF186Q9NXI6 227 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 PFASO15067 1338 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 ECM2O94769 699 aaPredicted RBP20.63■□□□□ 0.89
SDC1-203ENST00000403076 FCER1AP12319 257 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 MAPK4P31152 587 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 INF2Q27J81 1249 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 ZNF396Q96N95 335 aaPredicted RBP20.63■□□□□ 0.89
SDC1-203ENST00000403076 CYP39A1Q9NYL5 469 aa20.63■□□□□ 0.89
SDC1-203ENST00000403076 GHRHRQ02643 423 aa20.62■□□□□ 0.89
SDC1-203ENST00000403076 TBCKQ8TEA7 893 aa20.62■□□□□ 0.89
SDC1-203ENST00000403076 POTEB2H3BUK9 544 aa20.61■□□□□ 0.89
SDC1-203ENST00000403076 NCLP19338 710 aaKnown RBP20.61■□□□□ 0.89
SDC1-203ENST00000403076 RILPL1Q5EBL4 403 aa20.61■□□□□ 0.89
SDC1-203ENST00000403076 PLEKHH3Q7Z736 793 aa20.61■□□□□ 0.89
SDC1-203ENST00000403076 TAAR1Q96RJ0 339 aa20.61■□□□□ 0.89
SDC1-203ENST00000403076 COL20A1Q9P218 1284 aa20.61■□□□□ 0.89
SDC1-203ENST00000403076 STRNO43815 780 aa20.6■□□□□ 0.89
SDC1-203ENST00000403076 DNM1Q05193 864 aaKnown RBP20.6■□□□□ 0.89
SDC1-203ENST00000403076 GPR142Q7Z601 462 aa20.6■□□□□ 0.89
SDC1-203ENST00000403076 BEGAINQ9BUH8 593 aa20.6■□□□□ 0.89
SDC1-203ENST00000403076 TRAPPC10P48553 1259 aa20.59■□□□□ 0.89
SDC1-203ENST00000403076 UBXN2AP68543 259 aa20.59■□□□□ 0.89
SDC1-203ENST00000403076 ARHGEF16Q5VV41 709 aa20.59■□□□□ 0.89
SDC1-203ENST00000403076 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.59■□□□□ 0.89
SDC1-203ENST00000403076 NEK8Q86SG6 692 aa20.59■□□□□ 0.89
SDC1-203ENST00000403076 RMDN3Q96TC7 470 aa20.59■□□□□ 0.89
SDC1-203ENST00000403076 TFIP11Q9UBB9 837 aaKnown RBP20.59■□□□□ 0.89
SDC1-203ENST00000403076 MAP2K1Q02750 393 aaPredicted RBP20.58■□□□□ 0.89
SDC1-203ENST00000403076 CEBPZQ03701 1054 aaKnown RBP20.58■□□□□ 0.89
SDC1-203ENST00000403076 LETM2Q2VYF4 491 aa20.58■□□□□ 0.89
SDC1-203ENST00000403076 CHAMP1Q96JM3 812 aa20.58■□□□□ 0.89
SDC1-203ENST00000403076 PURBQ96QR8 312 aaKnown RBP20.58■□□□□ 0.89
SDC1-203ENST00000403076 CFHR5Q9BXR6 569 aa20.58■□□□□ 0.89
SDC1-203ENST00000403076 PGK2P07205 417 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 EIF2AK2P19525 551 aaKnown RBP20.58■□□□□ 0.88
SDC1-203ENST00000403076 PTPREP23469 700 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 ZNF76P36508 570 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 SREBF1P36956 1147 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 TOB1P50616 345 aaPredicted RBP20.58■□□□□ 0.88
SDC1-203ENST00000403076 KRT85P78386 507 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 ARHGAP4P98171 946 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 CNTN2Q02246 1040 aa20.58■□□□□ 0.88
SDC1-203ENST00000403076 TTC38Q5R3I4 469 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms