RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 HERVK_113Q902F9 699 aa33.54■■■□□ 2.96
HMGB1-205ENST00000399494 FAM227BQ96M60 508 aa33.54■■■□□ 2.96
HMGB1-205ENST00000399494 HIPK3Q9H422 1215 aa33.54■■■□□ 2.96
HMGB1-205ENST00000399494 TOMM22Q9NS69 142 aa33.54■■■□□ 2.96
HMGB1-205ENST00000399494 UMODL1Q5DID0 1318 aa33.53■■■□□ 2.96
HMGB1-205ENST00000399494 MCMDC2Q4G0Z9 681 aa33.53■■■□□ 2.96
HMGB1-205ENST00000399494 SYDE2Q5VT97 1194 aa33.53■■■□□ 2.96
HMGB1-205ENST00000399494 TRPV6Q9H1D0 765 aa33.53■■■□□ 2.96
HMGB1-205ENST00000399494 LCTP09848 1927 aa33.52■■■□□ 2.96
HMGB1-205ENST00000399494 FGBP02675 491 aa33.52■■■□□ 2.96
HMGB1-205ENST00000399494 PSMC6P62333 389 aa33.52■■■□□ 2.96
HMGB1-205ENST00000399494 RRP12Q5JTH9 1297 aaKnown RBP33.52■■■□□ 2.96
HMGB1-205ENST00000399494 USP38Q8NB14 1042 aa33.52■■■□□ 2.96
HMGB1-205ENST00000399494 GPCPD1Q9NPB8 672 aa33.52■■■□□ 2.96
HMGB1-205ENST00000399494 ADD3Q9UEY8 706 aaKnown RBP33.52■■■□□ 2.96
HMGB1-205ENST00000399494 A0A0D9SFI3 127 aa33.51■■■□□ 2.95
HMGB1-205ENST00000399494 NFIBO00712 420 aa33.51■■■□□ 2.95
HMGB1-205ENST00000399494 B4GALT4O60513 344 aa33.51■■■□□ 2.95
HMGB1-205ENST00000399494 SDSP20132 328 aa33.51■■■□□ 2.95
HMGB1-205ENST00000399494 NMIQ13287 307 aaPredicted RBP33.51■■■□□ 2.95
HMGB1-205ENST00000399494 DUSP28Q4G0W2 176 aa33.51■■■□□ 2.95
HMGB1-205ENST00000399494 NOC4LQ9BVI4 516 aaKnown RBP33.51■■■□□ 2.95
HMGB1-205ENST00000399494 DIAPH3Q9NSV4 1193 aa33.51■■■□□ 2.95
HMGB1-205ENST00000399494 CXXC1Q9P0U4 656 aaPredicted RBP33.51■■■□□ 2.95
HMGB1-205ENST00000399494 SPTBN5Q9NRC6 3674 aaKnown RBP33.51■■■□□ 2.95
HMGB1-205ENST00000399494 HSPD1P10809 573 aaKnown RBP33.5■■■□□ 2.95
HMGB1-205ENST00000399494 ALDH5A1P51649 535 aaPredicted RBP33.5■■■□□ 2.95
HMGB1-205ENST00000399494 FRMPD2Q68DX3 1309 aaPredicted RBP33.5■■■□□ 2.95
HMGB1-205ENST00000399494 LOC102724159A0A0B4J2E5 919 aa33.49■■■□□ 2.95
HMGB1-205ENST00000399494 HIP1O00291 1037 aa33.49■■■□□ 2.95
HMGB1-205ENST00000399494 CCL23P55773 120 aa33.49■■■□□ 2.95
HMGB1-205ENST00000399494 PWP2Q15269 919 aaKnown RBP33.49■■■□□ 2.95
HMGB1-205ENST00000399494 RBM47A0AV96 593 aaKnown RBP33.48■■■□□ 2.95
HMGB1-205ENST00000399494 CLEC4DQ8WXI8 215 aa33.48■■■□□ 2.95
HMGB1-205ENST00000399494 WDR11Q9BZH6 1224 aa33.48■■■□□ 2.95
HMGB1-205ENST00000399494 CHD9Q3L8U1 2897 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 PTPDC1A2A3K4 754 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 PDHBP11177 359 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 GSPT1P15170 499 aaKnown RBP33.47■■■□□ 2.95
HMGB1-205ENST00000399494 ZNF589Q86UQ0 364 aaPredicted RBP33.47■■■□□ 2.95
HMGB1-205ENST00000399494 TTC14Q96N46 770 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 WNT8AQ9H1J5 351 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 PRDM12Q9H4Q4 367 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 MSRAQ9UJ68 235 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 ZMYM6O95789 1325 aa33.47■■■□□ 2.95
HMGB1-205ENST00000399494 RAB30Q15771 203 aa33.46■■■□□ 2.95
HMGB1-205ENST00000399494 OTOP2Q7RTS6 562 aa33.46■■■□□ 2.95
HMGB1-205ENST00000399494 SYMPKQ92797 1274 aaKnown RBP33.46■■■□□ 2.95
HMGB1-205ENST00000399494 GAS2L1Q99501 681 aaPredicted RBP33.46■■■□□ 2.95
HMGB1-205ENST00000399494 ALDH8A1Q9H2A2 487 aaPredicted RBP33.46■■■□□ 2.95
HMGB1-205ENST00000399494 MTIF3Q9H2K0 278 aaKnown RBP33.46■■■□□ 2.95
HMGB1-205ENST00000399494 HAND2P61296 217 aa33.45■■■□□ 2.95
HMGB1-205ENST00000399494 VWCEQ96DN2 955 aa33.45■■■□□ 2.95
HMGB1-205ENST00000399494 POLR3EQ9NVU0 708 aa33.45■■■□□ 2.95
HMGB1-205ENST00000399494 MFAP1P55081 439 aaKnown RBP33.44■■■□□ 2.94
HMGB1-205ENST00000399494 ZNF543Q08ER8 600 aa33.44■■■□□ 2.94
HMGB1-205ENST00000399494 CWC27Q6UX04 472 aaKnown RBP33.44■■■□□ 2.94
HMGB1-205ENST00000399494 SLC30A10Q6XR72 485 aa33.44■■■□□ 2.94
HMGB1-205ENST00000399494 SNHG28P0DPA3 235 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 CALML3P27482 149 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 PURAQ00577 322 aaKnown RBP33.43■■■□□ 2.94
HMGB1-205ENST00000399494 AKNAD1Q5T1N1 836 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 RNF207Q6ZRF8 634 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 MFSD6Q6ZSS7 791 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 RPUSD2Q8IZ73 545 aaKnown RBP33.43■■■□□ 2.94
HMGB1-205ENST00000399494 PNMA2Q9UL42 364 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 CCDC171Q6TFL3 1326 aa33.43■■■□□ 2.94
HMGB1-205ENST00000399494 NKX2-4Q9H2Z4 354 aa33.42■■■□□ 2.94
HMGB1-205ENST00000399494 PRDM6Q9NQX0 595 aa33.42■■■□□ 2.94
HMGB1-205ENST00000399494 YBX2Q9Y2T7 364 aaKnown RBP33.42■■■□□ 2.94
HMGB1-205ENST00000399494 PCP11498 1178 aaKnown RBP33.41■■■□□ 2.94
HMGB1-205ENST00000399494 CPT1AP50416 773 aa33.41■■■□□ 2.94
HMGB1-205ENST00000399494 RPS6P62753 249 aaKnown RBP33.41■■■□□ 2.94
HMGB1-205ENST00000399494 ADGRE1Q14246 886 aa33.41■■■□□ 2.94
HMGB1-205ENST00000399494 SCLYQ96I15 445 aa33.41■■■□□ 2.94
HMGB1-205ENST00000399494 TRMT13Q9NUP7 481 aaKnown RBP33.41■■■□□ 2.94
HMGB1-205ENST00000399494 WDR19Q8NEZ3 1342 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 MYL3P08590 195 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 SUPT20HL2P0C7V6 817 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 EDNRBP24530 442 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 TJAP1Q5JTD0 557 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 TBC1D10CQ8IV04 446 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 OR6J1Q8NGC5 347 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 PPM1EQ8WY54 764 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 SLC28A3Q9HAS3 691 aa33.4■■■□□ 2.94
HMGB1-205ENST00000399494 PDE4DQ08499 809 aa33.39■■■□□ 2.94
HMGB1-205ENST00000399494 DNERQ8NFT8 737 aa33.39■■■□□ 2.94
HMGB1-205ENST00000399494 MTG1Q9BT17 334 aaPredicted RBP33.39■■■□□ 2.94
HMGB1-205ENST00000399494 TNKSO95271 1327 aa33.38■■■□□ 2.93
HMGB1-205ENST00000399494 CYP2C9P11712 490 aa33.38■■■□□ 2.93
HMGB1-205ENST00000399494 GPHNQ9NQX3 736 aaPredicted RBP33.38■■■□□ 2.93
HMGB1-205ENST00000399494 SLC4A7Q9Y6M7 1214 aa33.38■■■□□ 2.93
HMGB1-205ENST00000399494 NKRFO15226 690 aaKnown RBP eCLIP33.37■■■□□ 2.931e-9■□□□□ 9.2
HMGB1-205ENST00000399494 NBPF20Q3BBV1 942 aa33.37■■■□□ 2.93
HMGB1-205ENST00000399494 ERICH6BQ5W0A0 696 aa33.37■■■□□ 2.93
HMGB1-205ENST00000399494 RABGGTBP53611 331 aa33.36■■■□□ 2.93
HMGB1-205ENST00000399494 RGS22Q8NE09 1264 aa33.36■■■□□ 2.93
HMGB1-205ENST00000399494 SCFD2Q8WU76 684 aa33.36■■■□□ 2.93
HMGB1-205ENST00000399494 COPS5Q92905 334 aa33.36■■■□□ 2.93
HMGB1-205ENST00000399494 MPHOSPH6Q99547 160 aaKnown RBP33.36■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms