RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SPDYE16A6NNV3 312 aaPredicted RBP16.25■□□□□ 0.19
SKA1-202ENST00000398452 U2AF2P26368 475 aaKnown RBP eCLIP16.25■□□□□ 0.19
SKA1-202ENST00000398452 TKFCQ3LXA3 575 aa16.25■□□□□ 0.19
SKA1-202ENST00000398452 RILPL1Q5EBL4 403 aa16.25■□□□□ 0.19
SKA1-202ENST00000398452 PARK7Q99497 189 aaKnown RBP16.25■□□□□ 0.19
SKA1-202ENST00000398452 TEX13BQ9BXU2 312 aa16.25■□□□□ 0.19
SKA1-202ENST00000398452 ASCC2Q9H1I8 757 aaPredicted RBP16.25■□□□□ 0.19
SKA1-202ENST00000398452 EHMT1Q9H9B1 1298 aa16.25■□□□□ 0.19
SKA1-202ENST00000398452 SPDYE3A6NKU9 549 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 GCOM1H8Y6P7 765 aaPredicted RBP16.24■□□□□ 0.19
SKA1-202ENST00000398452 PDHXO00330 501 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 PPP1R11O60927 126 aaPredicted RBP16.24■□□□□ 0.19
SKA1-202ENST00000398452 POLR2MP0CAP2 368 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 PTMSP20962 102 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 COPB2P35606 906 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 HERVK_113P62684 666 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 SNRNP48Q6IEG0 339 aaKnown RBP16.24■□□□□ 0.19
SKA1-202ENST00000398452 P2RX7Q99572 595 aaKnown RBP16.24■□□□□ 0.19
SKA1-202ENST00000398452 PAGR1Q9BTK6 254 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 CEP131Q9UPN4 1083 aa16.24■□□□□ 0.19
SKA1-202ENST00000398452 BAG4O95429 457 aaKnown RBP16.23■□□□□ 0.19
SKA1-202ENST00000398452 FOSP01100 380 aaPredicted RBP16.23■□□□□ 0.19
SKA1-202ENST00000398452 STAT3P40763 770 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 NR5A1Q13285 461 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 NONOQ15233 471 aaKnown RBP eCLIP16.23■□□□□ 0.19
SKA1-202ENST00000398452 MYSM1Q5VVJ2 828 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 TYW1BQ6NUM6 668 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 PIK3AP1Q6ZUJ8 805 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 CCAR1Q8IX12 1150 aaKnown RBP16.23■□□□□ 0.19
SKA1-202ENST00000398452 BRI3BPQ8WY22 251 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 MS4A4AQ96JQ5 239 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 AGBL1Q96MI9 1066 aa16.23■□□□□ 0.19
SKA1-202ENST00000398452 SCAND2PQ9GZW5 306 aaPredicted RBP16.23■□□□□ 0.19
SKA1-202ENST00000398452 BIN2Q9UBW5 565 aaPredicted RBP16.23■□□□□ 0.19
SKA1-202ENST00000398452 KIF28PB7ZC32 967 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 BTBD19C9JJ37 291 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 ATP2A1O14983 1001 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 CFBP00751 764 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 GCLCP48506 637 aaPredicted RBP16.22■□□□□ 0.19
SKA1-202ENST00000398452 CCNA1P78396 465 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 DNM1Q05193 864 aaKnown RBP16.22■□□□□ 0.19
SKA1-202ENST00000398452 AP3B2Q13367 1082 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 SF3A1Q15459 793 aaKnown RBP16.22■□□□□ 0.19
SKA1-202ENST00000398452 JAKMIP3Q5VZ66 844 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 GPAT2Q6NUI2 795 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 LBX2Q6XYB7 198 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 SAMD3Q8N6K7 520 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 OXER1Q8TDS5 423 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 TRERF1Q96PN7 1200 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 HOMER2Q9NSB8 354 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 RNF146Q9NTX7 359 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 MAP3K20Q9NYL2 800 aaKnown RBP16.22■□□□□ 0.19
SKA1-202ENST00000398452 FBXO40Q9UH90 709 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 PCDHA6Q9UN73 950 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 ADAMTS5Q9UNA0 930 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 RABGAP1Q9Y3P9 1069 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 PCDHA8Q9Y5H6 950 aa16.22■□□□□ 0.19
SKA1-202ENST00000398452 GOLGA6L4A6NEF3 574 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 DDX11L8A8MPP1 907 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 FIBPO43427 364 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 BMP15O95972 392 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 ATP2B1P20020 1258 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 TRAPPC10P48553 1259 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 MOGSQ13724 837 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 STK38Q15208 465 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 CHST13Q8NET6 341 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 RASGRP4Q8TDF6 673 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 NAP1L4Q99733 375 aaKnown RBP16.21■□□□□ 0.19
SKA1-202ENST00000398452 ACAD9Q9H845 621 aa16.21■□□□□ 0.19
SKA1-202ENST00000398452 ZCCHC17Q9NP64 241 aaKnown RBP16.21■□□□□ 0.19
SKA1-202ENST00000398452 LOC285556D6RIA3 1793 aa16.21■□□□□ 0.18
SKA1-202ENST00000398452 ZNF536O15090 1300 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 SLC25A27O95847 323 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 TM4SF4P48230 202 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 MLLT1Q03111 559 aaPredicted RBP16.2■□□□□ 0.18
SKA1-202ENST00000398452 CEBPZQ03701 1054 aaKnown RBP16.2■□□□□ 0.18
SKA1-202ENST00000398452 TMEM132BQ14DG7 1078 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 FAM173BQ6P4H8 233 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 NSMFQ6X4W1 530 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 CTU1Q7Z7A3 348 aaKnown RBP16.2■□□□□ 0.18
SKA1-202ENST00000398452 NCAPG2Q86XI2 1143 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 IFNL1Q8IU54 200 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 ZNF296Q8WUU4 475 aaPredicted RBP16.2■□□□□ 0.18
SKA1-202ENST00000398452 SPATA32Q96LK8 384 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 MAF1Q9H063 256 aa16.2■□□□□ 0.18
SKA1-202ENST00000398452 PTPRFP10586 1907 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 TESPA1A2RU30 521 aaPredicted RBP16.19■□□□□ 0.18
SKA1-202ENST00000398452 PIK3CDO00329 1044 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 SOX10P56693 466 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 TAF1CQ15572 869 aaPredicted RBP16.19■□□□□ 0.18
SKA1-202ENST00000398452 UBE2SQ16763 222 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 WDR78Q5VTH9 848 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 USP17L6PQ6QN14 398 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 RNF207Q6ZRF8 634 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 CLEC17AQ6ZS10 378 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 FCHSD1Q86WN1 690 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 RIOX2Q8IUF8 465 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 SPATC1LQ9H0A9 340 aa16.19■□□□□ 0.18
SKA1-202ENST00000398452 R3HDMLQ9H3Y0 253 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms