RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 SIK1P57059 783 aa5.96□□□□□ -1.45
VPS13C-204ENST00000395898 PLA2G4DQ86XP0 818 aa5.96□□□□□ -1.45
VPS13C-204ENST00000395898 PPM1KQ8N3J5 372 aa5.96□□□□□ -1.45
VPS13C-204ENST00000395898 MIPOL1Q8TD10 442 aa5.96□□□□□ -1.45
VPS13C-204ENST00000395898 ANKRD36BP1Q96IX9 119 aa5.96□□□□□ -1.45
VPS13C-204ENST00000395898 VPS37BQ9H9H4 285 aa5.96□□□□□ -1.45
VPS13C-204ENST00000395898 ARHGEF37A1IGU5 675 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 ERCC3P19447 782 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 BCAMP50895 628 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CCNA1P78396 465 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 TRMT44Q8IYL2 757 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 U2AF1L4Q8WU68 220 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 LARP4BQ92615 738 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 SYMPKQ92797 1274 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 POLR3EQ9NVU0 708 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 PCDHA1Q9Y5I3 950 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 PASKQ96RG2 1323 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 SAMD9LQ8IVG5 1584 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 hCG_1642624A0A1W2PR95 340 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 TLR3O15455 904 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 DLATP10515 647 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 KRT3P12035 628 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 GSPT1P15170 499 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 GYG1P46976 350 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 SCYL2Q6P3W7 929 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CCDC170Q8IYT3 715 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 STAMQ92783 540 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 TTC1Q99614 292 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 WDR11Q9BZH6 1224 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 PPP1R12CQ9BZL4 782 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 VCX3AQ9NNX9 186 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 PCDHA4Q9UN74 947 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 FAN1Q9Y2M0 1017 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 POLR1AO95602 1720 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 MAGI2Q86UL8 1455 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 MYO1FO00160 1098 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 IFNB1P01574 187 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 ALAS1P13196 640 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 U2AF2P26368 475 aaKnown RBP eCLIP5.96□□□□□ -1.462e-6■■■□□ 19
VPS13C-204ENST00000395898 ADD1P35611 737 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 FKBP3Q00688 224 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 PPP2R5CQ13362 524 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CTAGE3PQ8IX95 158 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CCDC13Q8IYE1 715 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CCHCR1Q8TD31 782 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 EAF2Q96CJ1 260 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 DHTKD1Q96HY7 919 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 USP28Q96RU2 1077 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 OSBPL3Q9H4L5 887 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 TMEM63CQ9P1W3 806 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 STK17AQ9UEE5 414 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 RNF123Q5XPI4 1314 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 ABCC12Q96J65 1359 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 LRRIQ4A6NIV6 560 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 BBOX1O75936 387 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 GADL1Q6ZQY3 521 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 ZNF577Q9BSK1 485 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 MAP3K4Q9Y6R4 1608 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 ZNF853P0CG23 659 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 MFAP3P55082 362 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 POLR2FP61218 127 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 SCRN1Q12765 414 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CCDC38Q502W7 563 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 EAPPQ56P03 285 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 RSPH3Q86UC2 560 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 KIAA0825Q8IV33 1275 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 IL17REQ8NFR9 667 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 CACTINQ8WUQ7 758 aaKnown RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 Q9H521 79 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 KIAA1024Q9UPX6 916 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 FMNL1O95466 1100 aaPredicted RBP5.96□□□□□ -1.46
VPS13C-204ENST00000395898 BTDP43251 543 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 SLC7A3Q8WY07 619 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 MAP4K1Q92918 833 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 TUBGCP2Q9BSJ2 902 aa5.96□□□□□ -1.46
VPS13C-204ENST00000395898 LRMPQ12912 555 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 SUPT20HL1Q3ZLR7 823 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 FAM26FQ5R3K3 315 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 EPS15L1Q9UBC2 864 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 NSFP46459 744 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 MIS18BP1Q6P0N0 1132 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 NCAPG2Q86XI2 1143 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 CMTR1Q8N1G2 835 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 BBS5Q8N3I7 341 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 CNOT6LQ96LI5 555 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 NACC1Q96RE7 527 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 TRIM56Q9BRZ2 755 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 PAGR1Q9BTK6 254 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 DISC1Q9NRI5 854 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 BTBD18B2RXH4 712 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 MED7O43513 233 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 SRGAP2BP0DMP2 458 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 OAS2P29728 719 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 PSMD6Q15008 389 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 FAM47CQ5HY64 1035 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 ABI1Q8IZP0 508 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 DHX36Q9H2U1 1008 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 MRPL47Q9HD33 250 aaKnown RBP5.95□□□□□ -1.46
VPS13C-204ENST00000395898 ODR4Q5SWX8 454 aa5.95□□□□□ -1.46
VPS13C-204ENST00000395898 NBPF3Q9H094 633 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms