RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 PNMA6FA0A0J9YX94 578 aa27.47■■□□□ 1.99
SHMT1-204ENST00000395682 ADCY6O43306 1168 aa27.47■■□□□ 1.99
SHMT1-204ENST00000395682 HMGB1P09429 215 aaKnown RBP27.47■■□□□ 1.99
SHMT1-204ENST00000395682 RXRAP19793 462 aa27.47■■□□□ 1.99
SHMT1-204ENST00000395682 ADCYAP1R1P41586 468 aa27.47■■□□□ 1.99
SHMT1-204ENST00000395682 PWP2Q15269 919 aaKnown RBP27.47■■□□□ 1.99
SHMT1-204ENST00000395682 LRRC26Q2I0M4 334 aa27.47■■□□□ 1.99
SHMT1-204ENST00000395682 SGMS1Q86VZ5 419 aa27.47■■□□□ 1.99
SHMT1-204ENST00000395682 BAZ2BQ9UIF8 2168 aaKnown RBP27.47■■□□□ 1.99
SHMT1-204ENST00000395682 ADAMTS4O75173 837 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 GNAQP50148 359 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 TNFAIP2Q03169 654 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 TRAF1Q13077 416 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 NOL8Q76FK4 1167 aaKnown RBP27.46■■□□□ 1.99
SHMT1-204ENST00000395682 RAB11FIP4Q86YS3 637 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 FBXO16Q8IX29 292 aaPredicted RBP27.46■■□□□ 1.99
SHMT1-204ENST00000395682 C7orf61Q8IZ16 206 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 DNERQ8NFT8 737 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 PIBF1Q8WXW3 757 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 LZTS2Q9BRK4 669 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 VTA1Q9NP79 307 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 PDGFCQ9NRA1 345 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 SNX14Q9Y5W7 946 aa27.46■■□□□ 1.99
SHMT1-204ENST00000395682 SYNRGQ9UMZ2 1314 aa27.45■■□□□ 1.99
SHMT1-204ENST00000395682 SMARCA1P28370 1054 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 ATN1P54259 1190 aaPredicted RBP27.45■■□□□ 1.98
SHMT1-204ENST00000395682 TAPT1Q6NXT6 567 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 SYNE3Q6ZMZ3 975 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 FANCBQ8NB91 859 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 SYTL5Q8TDW5 730 aaPredicted RBP27.45■■□□□ 1.98
SHMT1-204ENST00000395682 FERMT2Q96AC1 680 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 JAKMIP1Q96N16 626 aaKnown RBP27.45■■□□□ 1.98
SHMT1-204ENST00000395682 MPHOSPH6Q99547 160 aaKnown RBP27.45■■□□□ 1.98
SHMT1-204ENST00000395682 SPZ1Q9BXG8 430 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 LCTP09848 1927 aa27.45■■□□□ 1.98
SHMT1-204ENST00000395682 MYH6P13533 1939 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 C11orf97A0A1B0GVM6 126 aaPredicted RBP27.44■■□□□ 1.98
SHMT1-204ENST00000395682 B4DLN1 442 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 CFBP00751 764 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 MRPL12P52815 198 aaKnown RBP27.44■■□□□ 1.98
SHMT1-204ENST00000395682 PDE4DQ08499 809 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 IQSEC1Q6DN90 963 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 TAAR1Q96RJ0 339 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 SPC25Q9HBM1 224 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 PHF24Q9UPV7 400 aa27.44■■□□□ 1.98
SHMT1-204ENST00000395682 OPLAHO14841 1288 aa27.43■■□□□ 1.98
SHMT1-204ENST00000395682 PLEKHA8P1O95397 391 aa27.43■■□□□ 1.98
SHMT1-204ENST00000395682 CPA1P15085 419 aa27.43■■□□□ 1.98
SHMT1-204ENST00000395682 CMTR1Q8N1G2 835 aaKnown RBP27.43■■□□□ 1.98
SHMT1-204ENST00000395682 SRBD1Q8N5C6 995 aaKnown RBP27.43■■□□□ 1.98
SHMT1-204ENST00000395682 KLHDC9Q8NEP7 349 aa27.43■■□□□ 1.98
SHMT1-204ENST00000395682 RRP36Q96EU6 259 aaKnown RBP27.43■■□□□ 1.98
SHMT1-204ENST00000395682 TSEN34Q9BSV6 310 aaKnown RBP27.43■■□□□ 1.98
SHMT1-204ENST00000395682 COL20A1Q9P218 1284 aa27.43■■□□□ 1.98
SHMT1-204ENST00000395682 EPB41L2O43491 1005 aaKnown RBP27.42■■□□□ 1.98
SHMT1-204ENST00000395682 SMPD1P17405 629 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 GJA9P57773 515 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 FGD1P98174 961 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 SLC39A5Q6ZMH5 540 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 MICU3Q86XE3 530 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 NSUN6Q8TEA1 469 aaKnown RBP27.42■■□□□ 1.98
SHMT1-204ENST00000395682 USP26Q9BXU7 913 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 UPF3AQ9H1J1 476 aaKnown RBP27.42■■□□□ 1.98
SHMT1-204ENST00000395682 BRPF3Q9ULD4 1205 aa27.42■■□□□ 1.98
SHMT1-204ENST00000395682 ALPK3Q96L96 1907 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 MYADML2A6NDP7 307 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 C6orf222P0C671 652 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-204ENST00000395682 EDNRBP24530 442 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 HSD17B4P51659 736 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 IRX5P78411 483 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-204ENST00000395682 KCNA10Q16322 511 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 APOA5Q6Q788 366 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 RMDN3Q96TC7 470 aa27.41■■□□□ 1.98
SHMT1-204ENST00000395682 GNEQ9Y223 722 aaKnown RBP27.41■■□□□ 1.98
SHMT1-204ENST00000395682 GNASQ5JWF2 1037 aa27.4■■□□□ 1.98
SHMT1-204ENST00000395682 CCSAPQ6IQ19 270 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-204ENST00000395682 BLOC1S2Q6QNY1 142 aa27.4■■□□□ 1.98
SHMT1-204ENST00000395682 MAP3K20Q9NYL2 800 aaKnown RBP27.4■■□□□ 1.98
SHMT1-204ENST00000395682 SEC63Q9UGP8 760 aaKnown RBP27.4■■□□□ 1.98
SHMT1-204ENST00000395682 DNAH12Q6ZR08 3092 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 PSMA5P28066 241 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 ACLYP53396 1101 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 GHRHRQ02643 423 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 TMEM63BQ5T3F8 832 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 CCDC82Q8N4S0 544 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 SAMD3Q8N6K7 520 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 PCSK9Q8NBP7 692 aaKnown RBP27.39■■□□□ 1.98
SHMT1-204ENST00000395682 WDR11Q9BZH6 1224 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 AP5M1Q9H0R1 490 aa27.39■■□□□ 1.98
SHMT1-204ENST00000395682 ZMYND8Q9ULU4 1186 aaPredicted RBP27.39■■□□□ 1.98
SHMT1-204ENST00000395682 KLF18A0A0U1RQI7 1052 aa27.38■■□□□ 1.97
SHMT1-204ENST00000395682 A0A1W2PQ45 241 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-204ENST00000395682 A0A1W2PQY0 241 aa27.38■■□□□ 1.97
SHMT1-204ENST00000395682 RBM47A0AV96 593 aaKnown RBP27.38■■□□□ 1.97
SHMT1-204ENST00000395682 DYNC1LI2O43237 492 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-204ENST00000395682 ZBTB43O43298 467 aa27.38■■□□□ 1.97
SHMT1-204ENST00000395682 CST5P28325 142 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-204ENST00000395682 HOXA13P31271 388 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-204ENST00000395682 RTP1P59025 263 aa27.38■■□□□ 1.97
SHMT1-204ENST00000395682 ARHGEF16Q5VV41 709 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms