RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 CARMIL3Q8ND23 1372 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 ARHGAP42A6NI28 874 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 STAT1P42224 750 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 VPS41P49754 854 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 C1orf228Q6PIY5 440 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 TRIML1Q8N9V2 468 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 NT5C3AQ9H0P0 336 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 RAB20Q9NX57 234 aa13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 TLR7Q9NYK1 1049 aaKnown RBP13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 ARPP21Q9UBL0 812 aaPredicted RBP13.12□□□□□ -0.31
PCDHA9-201ENST00000378122 PLEKHG3A1L390 1219 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 HIP1RO75146 1068 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 CCNA1P78396 465 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 BTBD18B2RXH4 712 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 LRRC24Q50LG9 513 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 PTPN22Q9Y2R2 807 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 SERPINB2P05120 415 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 GOLGA8HP0CJ92 632 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 NAA35Q5VZE5 725 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 EFCAB13Q8IY85 973 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 GRK7Q8WTQ7 553 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 P3H4Q92791 437 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 EPN1Q9Y6I3 576 aaPredicted RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 MYOM2P54296 1465 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 TNNI1P19237 187 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 IFT88Q13099 833 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 SMYD4Q8IYR2 804 aaPredicted RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 RETREG2Q8NC44 543 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 RIOK1Q9BRS2 568 aaKnown RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 TACC3Q9Y6A5 838 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 PRPF6O94906 941 aaKnown RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 RFC1P35251 1148 aaPredicted RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 DPCR1Q3MIW9 517 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 CDAN1Q8IWY9 1227 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 RASEFQ8IZ41 740 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 TAB3Q8N5C8 712 aaPredicted RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 FANCBQ8NB91 859 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 THAP12O43422 761 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 ZNF653Q96CK0 615 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 CNOT6LQ96LI5 555 aaKnown RBP13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 PLEKHF1Q96S99 279 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 CD2APQ9Y5K6 639 aa13.11□□□□□ -0.31
PCDHA9-201ENST00000378122 MAGI2Q86UL8 1455 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 KDM5DQ9BY66 1539 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 CD19P15391 556 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 SH2D4BQ5SQS7 431 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 RTEL1Q9NZ71 1219 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 FGAP02671 866 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 MMP10P09238 476 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 CTAGE3PQ8IX95 158 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 DCLK2Q8N568 766 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 STAG1Q8WVM7 1258 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 TRIM4Q9C037 500 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 HAUS4Q9H6D7 363 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 CDC23Q9UJX2 597 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 SPDYE2BA6NHP3 402 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 SOWAHDA6NJG2 315 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 ATP8B1O43520 1251 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 LUC7L3O95232 432 aaKnown RBP13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 OATP04181 439 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 SPDYE6P0CI01 402 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 GRAMD1CQ8IYS0 662 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 DDX25Q9UHL0 483 aaKnown RBP13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 OR52Z1P0C646 297 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 PSMD2Q13200 908 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 CCDC93Q567U6 631 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 RPS6KC1Q96S38 1066 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 PHBP35232 272 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 METTL14Q9HCE5 456 aaKnown RBP13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 MAN1B1Q9UKM7 699 aa13.1□□□□□ -0.31
PCDHA9-201ENST00000378122 TNKSO95271 1327 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 MAP7Q14244 749 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 PRR16Q569H4 304 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 KAZNQ674X7 775 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 SPICE1Q8N0Z3 855 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 CACTINQ8WUQ7 758 aaKnown RBP13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 PIDD1Q9HB75 910 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 MOSPD1Q9UJG1 213 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 CLCN6P51797 869 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 PTGDRQ13258 359 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 ANKRD13CQ8N6S4 541 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 TTLL6Q8N841 843 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 USP17L12C9JPN9 530 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 USP17L21D6R901 530 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 TCP1P17987 556 aaKnown RBP13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 EHHADHQ08426 723 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 KRT81Q14533 505 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 ZNF496Q96IT1 587 aaPredicted RBP13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 HOMER3Q9NSC5 361 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 TMEM94Q12767 1356 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 SETSIPP0DME0 302 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 HOXD10P28358 340 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 E2F5Q15329 346 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 NXNQ6DKJ4 435 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 ZNF589Q86UQ0 364 aaPredicted RBP13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 EEF2KMTQ96G04 330 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 ANTXR1Q9H6X2 564 aa13.09□□□□□ -0.31
PCDHA9-201ENST00000378122 K7ENM7 598 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms