RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 CARNS1A5YM72 827 aa5.41□□□□□ -1.54
PCDH9-201ENST00000377861 CHRNA3P32297 505 aa5.41□□□□□ -1.54
PCDH9-201ENST00000377861 L1RE1Q9UN81 338 aa5.41□□□□□ -1.54
PCDH9-201ENST00000377861 MTSS1O43312 755 aa5.41□□□□□ -1.54
PCDH9-201ENST00000377861 NPM3O75607 178 aaKnown RBP5.41□□□□□ -1.54
PCDH9-201ENST00000377861 FAM107AO95990 144 aa5.41□□□□□ -1.54
PCDH9-201ENST00000377861 SDCCAG8Q86SQ7 713 aaPredicted RBP5.41□□□□□ -1.54
PCDH9-201ENST00000377861 EAF2Q96CJ1 260 aaPredicted RBP5.41□□□□□ -1.54
PCDH9-201ENST00000377861 NAT9Q9BTE0 207 aa5.41□□□□□ -1.54
PCDH9-201ENST00000377861 BICD1Q96G01 975 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 ZNF518BQ9C0D4 1074 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 STAM2O75886 525 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 LDHAP00338 332 aaKnown RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 ITIH2P19823 946 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 KLHL30Q0D2K2 578 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 KPNB1Q14974 876 aaKnown RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 MFN1Q8IWA4 741 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 STMN2Q93045 179 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 STRBPQ96SI9 672 aaKnown RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 FRMD3A2A2Y4 597 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 TFCP2Q12800 502 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 TTC38Q5R3I4 469 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 CACTINQ8WUQ7 758 aaKnown RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 UBN2Q6ZU65 1347 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 IGF2BP3O00425 579 aaKnown RBP eCLIP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 GPAA1O43292 621 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 TRMT1Q9NXH9 659 aaKnown RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 CMTM5Q96DZ9 223 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 PARD6BQ9BYG5 372 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 BCL2L12Q9HB09 334 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 CD302Q8IX05 232 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 PANK2Q9BZ23 570 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 CTNNAL1Q9UBT7 734 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 CFAP43Q8NDM7 1665 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 KLHL10Q6JEL2 608 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 DNAJB2P25686 324 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 SYCP3Q8IZU3 236 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 BLIDQ8IZY5 108 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 MFAP3P55082 362 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 STK3Q13188 491 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 TNFAIP1Q13829 316 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 GAS2L3Q86XJ1 694 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 TTC7AQ9ULT0 858 aaPredicted RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.4□□□□□ -1.54
PCDH9-201ENST00000377861 ASIC1P78348 528 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 IQCB1Q15051 598 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 UVRAGQ9P2Y5 699 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 PCDHA4Q9UN74 947 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 DAAM2Q86T65 1068 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 ZNF677Q86XU0 584 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 CCDC13Q8IYE1 715 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 SGSM3Q96HU1 749 aa5.4□□□□□ -1.54
PCDH9-201ENST00000377861 TSHRP16473 764 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 TMEM60Q9H2L4 133 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 GUCA1BQ9UMX6 200 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 GZMAP12544 262 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 DENND2CQ68D51 928 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 CCDC82Q8N4S0 544 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 SPATA20Q8TB22 786 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 TBC1D22BQ9NU19 505 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 HADHQ16836 314 aaKnown RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 SESTD1Q86VW0 696 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 CEMIPQ8WUJ3 1361 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 MYO3BQ8WXR4 1341 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 GMNCA6NCL1 334 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 KRR1Q13601 381 aaKnown RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 SPDYAQ5MJ70 313 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 C1orf115Q9H7X2 142 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ABCF2Q9UG63 623 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ZNF215Q9UL58 517 aaPredicted RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 GCC2Q8IWJ2 1684 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 KIAA0556O60303 1618 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 TNFAIP3P21580 790 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 NEK10Q6ZWH5 1172 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 CCDC144CPQ8IYA2 1237 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 CNKSR2Q8WXI2 1034 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 FANCLQ9NW38 375 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 EIF2S1P05198 315 aaKnown RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 CEP72Q9P209 647 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 KIF23Q02241 960 aaPredicted RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 H2AFXP16104 143 aaPredicted RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ARHGAP10A1A4S6 786 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 MYL4P12829 197 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 TNNI2P48788 182 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 PAPD7Q5XG87 772 aaKnown RBP5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ICE2Q659A1 982 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ZNF365Q70YC5 407 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ENGASEQ8NFI3 743 aa5.4□□□□□ -1.55
PCDH9-201ENST00000377861 ZBTB7CA1YPR0 619 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 CCNI2Q6ZMN8 369 aaPredicted RBP5.39□□□□□ -1.55
PCDH9-201ENST00000377861 KIAA0825Q8IV33 1275 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 O00370 1275 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 SFNP31947 248 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 ZNF398Q8TD17 642 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 PNMA6FA0A0J9YX94 578 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 RHOBTB3O94955 611 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 SMG5Q9UPR3 1016 aaKnown RBP5.39□□□□□ -1.55
PCDH9-201ENST00000377861 ADGRG1Q9Y653 693 aa5.39□□□□□ -1.55
PCDH9-201ENST00000377861 ABCA8O94911 1581 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms