RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 MAPKAPK5Q8IW41 473 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 SCYL3Q8IZE3 742 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 PCDHB4Q9Y5E5 795 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 PIK3C2GO75747 1445 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 MTHFSDQ2M296 383 aaKnown RBP13.56□□□□□ -0.24
VPS13A-204ENST00000376634 DCAF15Q66K64 600 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 MAP7D3Q8IWC1 876 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 TXLNGQ9NUQ3 528 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 KCNJ14Q9UNX9 436 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 MYLK4Q86YV6 388 aaPredicted RBP13.56□□□□□ -0.24
VPS13A-204ENST00000376634 hCG_1642624A0A1W2PR95 340 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 ALDH1B1P30837 517 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 MYL7Q01449 175 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 PPM1KQ8N3J5 372 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 TRIM11Q96F44 468 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 PAGR1Q9BTK6 254 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 PARD3Q8TEW0 1356 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 F8W8V4 182 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 ZC3H15Q8WU90 426 aaKnown RBP13.56□□□□□ -0.24
VPS13A-204ENST00000376634 KIF20BQ96Q89 1820 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 SLC4A1P02730 911 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 PRKG1Q13976 671 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 SUCLA2Q9P2R7 463 aaPredicted RBP13.56□□□□□ -0.24
VPS13A-204ENST00000376634 SCINQ9Y6U3 715 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 MED23Q9ULK4 1368 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 GADL1Q6ZQY3 521 aa13.56□□□□□ -0.24
VPS13A-204ENST00000376634 H7C1D1 291 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 POLR2MP0CAP2 368 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 CCDC138Q96M89 665 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ZSCAN10Q96SZ4 725 aaPredicted RBP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 XPO4Q9C0E2 1151 aaKnown RBP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 BPIFB4P59827 614 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 XKR9Q5GH70 373 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 SORBS3O60504 671 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ABI1Q8IZP0 508 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ABTB1Q969K4 478 aaPredicted RBP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ZMYM6O95789 1325 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 GPC4O75487 556 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 PABPC4Q13310 644 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 NOSTRINQ8IVI9 506 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 SUGCTQ9HAC7 445 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ZBTB40Q9NUA8 1239 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 MRPL11Q9Y3B7 192 aaKnown RBP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 BUB1O43683 1085 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 PTPROQ16827 1216 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 KRT40Q6A162 431 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 CABLES1Q8TDN4 633 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 DESI2Q9BSY9 194 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 PCDHA12Q9UN75 941 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 DLGAP5Q15398 846 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 RNF217Q8TC41 542 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 MAGEF1Q9HAY2 307 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 SLC12A6Q9UHW9 1150 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ZNF148Q9UQR1 794 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 FAM227BQ96M60 508 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 ATP8A2Q9NTI2 1148 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 LMCD1Q9NZU5 365 aa13.55□□□□□ -0.24
VPS13A-204ENST00000376634 FRMPD2Q68DX3 1309 aaPredicted RBP13.55□□□□□ -0.24
VPS13A-204ENST00000376634 H3BRJ5 948 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TAF5LO75529 589 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ZNF790Q6PG37 636 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TRIM59Q8IWR1 403 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 FBXO41Q8TF61 875 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ATP10DQ9P241 1426 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ATP2B4P23634 1241 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TECP42680 631 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 DEUP1Q05D60 604 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ANKRD36BP1Q96IX9 119 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TRIM15Q9C019 465 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 COL4A3BPQ9Y5P4 624 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ZNF233A6NK53 670 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 AOC3Q16853 763 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 CCDC197Q8NCU1 140 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 SNX25Q9H3E2 840 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TMEM247A6NEH6 219 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ART3Q13508 389 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 KBTBD3Q8NAB2 608 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 CPSF3Q9UKF6 684 aaKnown RBP13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TFDP1Q14186 410 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ARHGEF18Q6ZSZ5 1173 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 EFCAB13Q8IY85 973 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 PIP4K2CQ8TBX8 421 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ZNF594Q96JF6 807 aaPredicted RBP13.54□□□□□ -0.24
VPS13A-204ENST00000376634 NPR1P16066 1061 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 GALNT17Q6IS24 598 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 SLC38A10Q9HBR0 1119 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 KRT82Q9NSB4 513 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 HNRNPDLO14979 420 aaKnown RBP13.54□□□□□ -0.24
VPS13A-204ENST00000376634 CEP19Q96LK0 163 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 MCUQ8NE86 351 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 CCHCR1Q8TD31 782 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 TEX12Q9BXU0 123 aa13.54□□□□□ -0.24
VPS13A-204ENST00000376634 ANKRD35Q8N283 1001 aa13.53□□□□□ -0.24
VPS13A-204ENST00000376634 POLR1AO95602 1720 aaPredicted RBP13.53□□□□□ -0.24
VPS13A-204ENST00000376634 PPIP5K2O43314 1243 aa13.53□□□□□ -0.24
VPS13A-204ENST00000376634 LIG3P49916 1009 aa13.53□□□□□ -0.24
VPS13A-204ENST00000376634 NOP14P78316 857 aaKnown RBP13.53□□□□□ -0.24
VPS13A-204ENST00000376634 RFX6Q8HWS3 928 aa13.53□□□□□ -0.24
VPS13A-204ENST00000376634 FBXL13Q8NEE6 735 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms