RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 RIOK3O14730 519 aaKnown RBP17.62■□□□□ 0.41
CCDC40-202ENST00000374876 REM2Q8IYK8 340 aaPredicted RBP17.62■□□□□ 0.41
CCDC40-202ENST00000374876 SRBD1Q8N5C6 995 aaKnown RBP17.62■□□□□ 0.41
CCDC40-202ENST00000374876 CCDC150Q8NCX0 1101 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 NEDD1Q8NHV4 660 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 CEP95Q96GE4 821 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 FEZ1Q99689 392 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 MORC2Q9Y6X9 1032 aaPredicted RBP17.62■□□□□ 0.41
CCDC40-202ENST00000374876 CBFA2T2O43439 604 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 BMP15O95972 392 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 SERPINC1P01008 464 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 ATP1A3P13637 1013 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 TREML2Q5T2D2 321 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 MTERF4Q7Z6M4 381 aaKnown RBP17.62■□□□□ 0.41
CCDC40-202ENST00000374876 PDILTQ8N807 584 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 SMARCE1Q969G3 411 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 BEGAINQ9BUH8 593 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 HSD3B7Q9H2F3 369 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 IL17RBQ9NRM6 502 aa17.62■□□□□ 0.41
CCDC40-202ENST00000374876 IGKV6D-41A0A0C4DH26 115 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 KIF5BP33176 963 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 EARS2Q5JPH6 523 aaKnown RBP17.61■□□□□ 0.41
CCDC40-202ENST00000374876 GPAT2Q6NUI2 795 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 FASTKD5Q7L8L6 764 aaKnown RBP17.61■□□□□ 0.41
CCDC40-202ENST00000374876 CCDC34Q96HJ3 373 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 EMILIN3Q9NT22 766 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 MAN1B1Q9UKM7 699 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 PTPRFP10586 1907 aa17.61■□□□□ 0.41
CCDC40-202ENST00000374876 C19orf81C9J6K1 198 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 TBC1D8O95759 1140 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 SFPQP23246 707 aaKnown RBP eCLIP17.6■□□□□ 0.41
CCDC40-202ENST00000374876 UBASH3AP57075 661 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 SH3D19Q5HYK7 790 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 KAT14Q9H8E8 782 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 ARHGEF10LQ9HCE6 1279 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 MTMR4Q9NYA4 1195 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 DACH1Q9UI36 760 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 NRDCO43847 1150 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 HSPA1AP0DMV8 641 aaKnown RBP17.6■□□□□ 0.41
CCDC40-202ENST00000374876 HSPA1BP0DMV9 641 aaKnown RBP17.6■□□□□ 0.41
CCDC40-202ENST00000374876 SCG2P13521 617 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 BMP6P22004 513 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 NT5C2P49902 561 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 KIAA1755Q5JYT7 1200 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 NT5DC1Q5TFE4 455 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 FERMT2Q96AC1 680 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 R3HDMLQ9H3Y0 253 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 TMOD4Q9NZQ9 345 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 PAXBP1Q9Y5B6 917 aa17.6■□□□□ 0.41
CCDC40-202ENST00000374876 PDHXO00330 501 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 ACTN4O43707 911 aaKnown RBP17.59■□□□□ 0.41
CCDC40-202ENST00000374876 RAD21O60216 631 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 PRR29P0C7W0 189 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 NLRP5P59047 1200 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 USP17L2Q6R6M4 530 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 USP49Q70CQ1 688 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 MLKLQ8NB16 471 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 TSC1Q92574 1164 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 KIAA1683Q9H0B3 1180 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 FANCLQ9NW38 375 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 TMX2Q9Y320 296 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 GREB1LQ9C091 1923 aaPredicted RBP17.59■□□□□ 0.41
CCDC40-202ENST00000374876 USP27XA6NNY8 438 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 TTC38Q5R3I4 469 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 RCSD1Q6JBY9 416 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 ARMCX5Q6P1M9 558 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 ANKRD23Q86SG2 305 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 GRAMD1CQ8IYS0 662 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 SPICE1Q8N0Z3 855 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 TRIML1Q8N9V2 468 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 PROCA1Q8NCQ7 364 aaPredicted RBP17.59■□□□□ 0.41
CCDC40-202ENST00000374876 TNFRSF25Q93038 417 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 NYAP2Q9P242 653 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 STX8Q9UNK0 236 aa17.59■□□□□ 0.41
CCDC40-202ENST00000374876 SARSP49591 514 aaKnown RBP17.58■□□□□ 0.4
CCDC40-202ENST00000374876 PTPN14Q15678 1187 aa17.58■□□□□ 0.4
CCDC40-202ENST00000374876 ZNF174Q15697 407 aa17.58■□□□□ 0.4
CCDC40-202ENST00000374876 NPY5RQ15761 445 aa17.58■□□□□ 0.4
CCDC40-202ENST00000374876 PFKFB3Q16875 520 aaPredicted RBP17.58■□□□□ 0.4
CCDC40-202ENST00000374876 CEP135Q66GS9 1140 aa17.58■□□□□ 0.4
CCDC40-202ENST00000374876 DGKHQ86XP1 1220 aa17.58■□□□□ 0.4
CCDC40-202ENST00000374876 CCAR2Q8N163 923 aaKnown RBP17.58■□□□□ 0.4
CCDC40-202ENST00000374876 DHX58Q96C10 678 aa17.58■□□□□ 0.4
CCDC40-202ENST00000374876 PLIN4Q96Q06 1357 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 TTLL1O95922 423 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 CYP2C8P10632 490 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 USP14P54578 494 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 MORC3Q14149 939 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 TAF1CQ15572 869 aaPredicted RBP17.57■□□□□ 0.4
CCDC40-202ENST00000374876 LRRC47Q8N1G4 583 aaKnown RBP17.57■□□□□ 0.4
CCDC40-202ENST00000374876 EPSTI1Q96J88 318 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 KCND1Q9NSA2 647 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 TRMT1Q9NXH9 659 aaKnown RBP17.57■□□□□ 0.4
CCDC40-202ENST00000374876 AGTPBP1Q9UPW5 1226 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 ALDH1A1P00352 501 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 CRHR2Q13324 411 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 CCDC178Q5BJE1 867 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 PNMA1Q8ND90 353 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 ZNF592Q92610 1267 aa17.57■□□□□ 0.4
CCDC40-202ENST00000374876 SYMPKQ92797 1274 aaKnown RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms