RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 PANX2Q96RD6 677 aa16.2■□□□□ 0.18
CHD4-201ENST00000357008 SPATS2LQ9NUQ6 558 aaKnown RBP16.2■□□□□ 0.18
CHD4-201ENST00000357008 ERBB4Q15303 1308 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 LRRC24Q50LG9 513 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 PLEKHF1Q96S99 279 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 RIOK1Q9BRS2 568 aaKnown RBP16.19■□□□□ 0.18
CHD4-201ENST00000357008 KCNQ3O43525 872 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 SERPINB6P35237 376 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 SCYL2Q6P3W7 929 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 TRIM50Q86XT4 487 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 CLEC11AQ9Y240 323 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 KIAA0556O60303 1618 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 PCCAP05165 728 aaPredicted RBP16.19■□□□□ 0.18
CHD4-201ENST00000357008 BPIFB4P59827 614 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 NNTQ13423 1086 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 CASP8Q14790 479 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 LARP4BQ92615 738 aaKnown RBP16.19■□□□□ 0.18
CHD4-201ENST00000357008 EEF2KMTQ96G04 330 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 DBNLQ9UJU6 430 aaKnown RBP16.19■□□□□ 0.18
CHD4-201ENST00000357008 MYOM2P54296 1465 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 MYO1FO00160 1098 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 CTNND1O60716 968 aaKnown RBP16.19■□□□□ 0.18
CHD4-201ENST00000357008 RPSAP08865 295 aaKnown RBP16.19■□□□□ 0.18
CHD4-201ENST00000357008 MESDQ14696 234 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 KLHL29Q96CT2 875 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 HOOK2Q96ED9 719 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 POC1B-GALNT4F8VUJ3 575 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 ARHGEF18Q6ZSZ5 1173 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 ACRBPQ8NEB7 543 aa16.19■□□□□ 0.18
CHD4-201ENST00000357008 ABCC12Q96J65 1359 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 TOM1O60784 492 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 CDKL2Q92772 493 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 PBKQ96KB5 322 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 USP40Q9NVE5 1235 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 RWDD2AQ9UIY3 292 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 FAF1Q9UNN5 650 aaPredicted RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 SOWAHDA6NJG2 315 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 SMIM24O75264 130 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 ZBED6P86452 979 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 C2orf54Q08AI8 447 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 FBXO38Q6PIJ6 1188 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 PDZD4Q76G19 769 aaPredicted RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 GJA10Q969M2 543 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 THEGQ9P2T0 379 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 ATP8A1Q9Y2Q0 1164 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 FRMPD2Q68DX3 1309 aaPredicted RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 MGEA5O60502 916 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 RNF8O76064 485 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 RBBP5Q15291 538 aaKnown RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 E2F5Q15329 346 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 WHAMMQ8TF30 809 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 SPATA31E1Q6ZUB1 1445 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 INHBAP08476 426 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 PNMA6AP0CW24 399 aaPredicted RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 TSPYL2Q9H2G4 693 aaPredicted RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 PTPN22Q9Y2R2 807 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 GOLGA8HP0CJ92 632 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 HSPA6P17066 643 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 GARSP41250 739 aaKnown RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 YARSP54577 528 aaKnown RBP16.18■□□□□ 0.18
CHD4-201ENST00000357008 XKR9Q5GH70 373 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 TRIM42Q8IWZ5 723 aa16.18■□□□□ 0.18
CHD4-201ENST00000357008 BICRAQ9NZM4 1560 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 STMN1P16949 149 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 BCAMP50895 628 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 MFAP3P55082 362 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 MYL7Q01449 175 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 PTK2Q05397 1052 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 EIF3CLB5ME19 914 aaKnown RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 COBLO75128 1261 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 CIAO1O76071 339 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 NR2F2P24468 414 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 PLTPP55058 493 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 FKBP3Q00688 224 aaKnown RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 GNPTABQ3T906 1256 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 SMYD4Q8IYR2 804 aaPredicted RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 SCYL3Q8IZE3 742 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 EIF3CQ99613 913 aaKnown RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 MRPL11Q9Y3B7 192 aaKnown RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 SOS2Q07890 1332 aaPredicted RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 KDM5AP29375 1690 aaKnown RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 TNNC2P02585 160 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 POLR2MP0CAP2 368 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 YWHAGP61981 247 aaKnown RBP eCLIP16.17■□□□□ 0.182e-6■□□□□ 11.3
CHD4-201ENST00000357008 CCDC127Q96BQ5 260 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 DHX9Q08211 1270 aaKnown RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 MFSD14BQ5SR56 506 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 NLRP7Q8WX94 980 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 TEKT3Q9BXF9 490 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 PCDHA4Q9UN74 947 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 FRMD3A2A2Y4 597 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 NDUFA10O95299 355 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 FOSP01100 380 aaPredicted RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 GYG1P46976 350 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 FBXO11Q86XK2 927 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 GPHNQ9NQX3 736 aaPredicted RBP16.17■□□□□ 0.18
CHD4-201ENST00000357008 KIAA1024Q9UPX6 916 aa16.17■□□□□ 0.18
CHD4-201ENST00000357008 AFPP02771 609 aaKnown RBP16.16■□□□□ 0.18
CHD4-201ENST00000357008 DLATP10515 647 aaKnown RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms