RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 PHF6Q8IWS0 365 aaKnown RBP eCLIP17■□□□□ 0.31
PRPF40A-201ENST00000354363 TMEM199Q8N511 208 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 CLEC4DQ8WXI8 215 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 OSBPL3Q9H4L5 887 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 RNF41Q9H4P4 317 aaPredicted RBP17■□□□□ 0.31
PRPF40A-201ENST00000354363 ADD3Q9UEY8 706 aaKnown RBP17■□□□□ 0.31
PRPF40A-201ENST00000354363 PRUNE2Q8WUY3 3088 aa17■□□□□ 0.31
PRPF40A-201ENST00000354363 LOC102724159A0A0B4J2E5 919 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 NUCB1Q02818 461 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 PWP2Q15269 919 aaKnown RBP16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 SLC30A10Q6XR72 485 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 SCN10AQ9Y5Y9 1956 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 DNAJB2P25686 324 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 CYP2C18P33260 490 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 DUSP28Q4G0W2 176 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 MAFAQ8NHW3 353 aaPredicted RBP16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 ESR2Q92731 530 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 ZKSCAN3Q9BRR0 538 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 PNMA2Q9UL42 364 aa16.99■□□□□ 0.31
PRPF40A-201ENST00000354363 KIAA1217Q5T5P2 1943 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 WDR19Q8NEZ3 1342 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 ZNF213O14771 459 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 ACRP10323 421 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 CALML3P27482 149 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 PSMC6P62333 389 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 RASIP1Q5U651 963 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 RNF207Q6ZRF8 634 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 YTHDC1Q96MU7 727 aaKnown RBP16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 SEZ6LQ9BYH1 1024 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 WDR11Q9BZH6 1224 aa16.98■□□□□ 0.31
PRPF40A-201ENST00000354363 RBM47A0AV96 593 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 FOSL2P15408 326 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 PSRC1Q6PGN9 363 aaPredicted RBP16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 CWC27Q6UX04 472 aaKnown RBP16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 ZNF365Q70YC5 407 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 DGKHQ86XP1 1220 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 EXOC6Q8TAG9 804 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 HIPK3Q9H422 1215 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 IL23AQ9NPF7 189 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 SCN5AQ14524 2016 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 UMODL1Q5DID0 1318 aa16.97■□□□□ 0.31
PRPF40A-201ENST00000354363 B4GALT4O60513 344 aa16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 GOLGA8HP0CJ92 632 aa16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 RPS6P62753 249 aaKnown RBP16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 GRIN2CQ14957 1233 aa16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 GPATCH4Q5T3I0 446 aaKnown RBP16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 COL25A1Q9BXS0 654 aaPredicted RBP16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 TRPV6Q9H1D0 765 aa16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 DIAPH3Q9NSV4 1193 aa16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 TRIP12Q14669 1992 aaPredicted RBP16.96■□□□□ 0.31
PRPF40A-201ENST00000354363 GRXCR1A8MXD5 290 aa16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 KDM4AO75164 1064 aa16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 NT5C2P49902 561 aa16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 TIFAQ96CG3 184 aa16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 NOC4LQ9BVI4 516 aaKnown RBP16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 UBA5Q9GZZ9 404 aa16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 CPVLQ9H3G5 476 aa16.96■□□□□ 0.3
PRPF40A-201ENST00000354363 MYH7BA7E2Y1 1941 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 EDNRBP24530 442 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 PDE4DQ08499 809 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 USH1GQ495M9 461 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 CCDC178Q5BJE1 867 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 IQCA1Q86XH1 822 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 PNMA1Q8ND90 353 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 DNERQ8NFT8 737 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 HERVK_113Q902F9 699 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 PBX4Q9BYU1 374 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 ZNF576Q9H609 170 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 POLR3EQ9NVU0 708 aa16.95■□□□□ 0.3
PRPF40A-201ENST00000354363 B4E1Z4 1266 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 HIP1O00291 1037 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 PBX2P40425 430 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 PURAQ00577 322 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 OR6J1Q8NGC5 347 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 ANKS1AQ92625 1134 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 MPHOSPH6Q99547 160 aaKnown RBP16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 DSCC1Q9BVC3 393 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 WNT8AQ9H1J5 351 aa16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 ALDH8A1Q9H2A2 487 aaPredicted RBP16.94■□□□□ 0.3
PRPF40A-201ENST00000354363 FGBP02675 491 aa16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 MYL3P08590 195 aa16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 CPT1AP50416 773 aa16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 CCL23P55773 120 aa16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 RGS22Q8NE09 1264 aa16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 KAT14Q9H8E8 782 aa16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 CXXC1Q9P0U4 656 aaPredicted RBP16.93■□□□□ 0.3
PRPF40A-201ENST00000354363 NKRFO15226 690 aaKnown RBP eCLIP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 PPP2R5BQ15173 497 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 CDC37Q16543 378 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 ENAHQ8N8S7 591 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 SCFD2Q8WU76 684 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 COPS5Q92905 334 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 ZSCAN10Q96SZ4 725 aaPredicted RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 ZSWIM5Q9P217 1185 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 BAZ2BQ9UIF8 2168 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 IMMTQ16891 758 aaKnown RBP16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 ASPRV1Q53RT3 343 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 ADGRF4Q8IZF3 695 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 TBC1D5Q92609 795 aa16.92■□□□□ 0.3
PRPF40A-201ENST00000354363 MTG1Q9BT17 334 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms