RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 MSL1Q68DK7 614 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 SLC51AQ86UW1 340 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 TEX2Q8IWB9 1127 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 CAGE1Q8TC20 777 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 GPR101Q96P66 508 aaPredicted RBP17.7■□□□□ 0.42
HMGA1-202ENST00000347617 MMS19Q96T76 1030 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 SH3GL2Q99962 352 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 ZNHIT6Q9NWK9 470 aaKnown RBP17.7■□□□□ 0.42
HMGA1-202ENST00000347617 CAPN11Q9UMQ6 739 aa17.7■□□□□ 0.42
HMGA1-202ENST00000347617 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.7■□□□□ 0.42
HMGA1-202ENST00000347617 GAKO14976 1311 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 ZEB2O60315 1214 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 PRLRP16471 622 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 TNFRSF8P28908 595 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 INPP5BP32019 993 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 KRT2P35908 639 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 AFMP43652 599 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 FKBP1AP62942 108 aaKnown RBP17.69■□□□□ 0.42
HMGA1-202ENST00000347617 NNTQ13423 1086 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 MFSD14BQ5SR56 506 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 RRAGBQ5VZM2 374 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 MICALCLQ6ZW33 695 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 PODNQ7Z5L7 613 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 CNPY4Q8N129 248 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 ZNF622Q969S3 477 aaKnown RBP eCLIP17.69■□□□□ 0.42
HMGA1-202ENST00000347617 JAKMIP2Q96AA8 810 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 KCNJ14Q9UNX9 436 aa17.69■□□□□ 0.42
HMGA1-202ENST00000347617 REXO2Q9Y3B8 237 aaKnown RBP17.69■□□□□ 0.42
HMGA1-202ENST00000347617 SRRM3A6NNA2 597 aaPredicted RBP17.68■□□□□ 0.42
HMGA1-202ENST00000347617 AGPSO00116 658 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 CCT6AP40227 531 aaKnown RBP17.68■□□□□ 0.42
HMGA1-202ENST00000347617 MEA1Q16626 185 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 EMBQ6PCB8 327 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 KIAA1328Q86T90 577 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 NKX2-3Q8TAU0 364 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 SYMPKQ92797 1274 aaKnown RBP17.68■□□□□ 0.42
HMGA1-202ENST00000347617 PAGR1Q9BTK6 254 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 MRIQ9BWK5 157 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 KAT14Q9H8E8 782 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 SENP2Q9HC62 589 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 CABP5Q9NP86 173 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 INCENPQ9NQS7 918 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 LGALS16A8MUM7 142 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 ATP1A1P05023 1023 aaKnown RBP17.68■□□□□ 0.42
HMGA1-202ENST00000347617 CCT5P48643 541 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 MMP14P50281 582 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 CDK17Q00537 523 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 C7orf43Q8WVR3 580 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 PURBQ96QR8 312 aaKnown RBP17.68■□□□□ 0.42
HMGA1-202ENST00000347617 UBAC1Q9BSL1 405 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 VPS16Q9H269 839 aa17.68■□□□□ 0.42
HMGA1-202ENST00000347617 ROBO3Q96MS0 1386 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 EPHB4P54760 987 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 UBXN1Q04323 297 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 SEC23AQ15436 765 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 C12orf60Q5U649 245 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 USP49Q70CQ1 688 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 IQCA1Q86XH1 822 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 MB21D1Q8N884 522 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 NELFBQ8WX92 580 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 THAP9Q9H5L6 903 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 GGA2Q9UJY4 613 aa17.67■□□□□ 0.42
HMGA1-202ENST00000347617 A0A087X0B3 334 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 MYL1P05976 194 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 CHRM1P11229 460 aaPredicted RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 GUCY1A2P33402 732 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 TRAPPC10P48553 1259 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 DNM2P50570 870 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 HERVK_113P62684 666 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 NR5A1Q13285 461 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 GRIK5Q16478 980 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 CCDC178Q5BJE1 867 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 RRP12Q5JTH9 1297 aaKnown RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 YTHDF3Q7Z739 585 aaKnown RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 BCAS4Q8TDM0 211 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 MYL10Q9BUA6 226 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 TOMM22Q9NS69 142 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 TAB2Q9NYJ8 693 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 JAG2Q9Y219 1238 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 KIAA0754O94854 1291 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 ABL1P00519 1130 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 GTF2IP78347 998 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 ATP2C1P98194 919 aaPredicted RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 E2F4Q16254 413 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 CCDC155Q8N6L0 562 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 FANCBQ8NB91 859 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 C1orf131Q8NDD1 294 aaKnown RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 SUPT20HQ8NEM7 779 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 SH3RF3Q8TEJ3 882 aaPredicted RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 EPSTI1Q96J88 318 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 ZSCAN10Q96SZ4 725 aaPredicted RBP17.66■□□□□ 0.42
HMGA1-202ENST00000347617 RUFY1Q96T51 708 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 PHF20Q9BVI0 1012 aa17.66■□□□□ 0.42
HMGA1-202ENST00000347617 LAMB1P07942 1786 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 DLEC1Q9Y238 1755 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 BAZ2AQ9UIF9 1905 aaKnown RBP17.65■□□□□ 0.42
HMGA1-202ENST00000347617 HSF2BPO75031 334 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 FSBPO95073 299 aa17.65■□□□□ 0.42
HMGA1-202ENST00000347617 TFRCP02786 760 aaKnown RBP17.65■□□□□ 0.42
HMGA1-202ENST00000347617 HNRNPH1P31943 449 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms