RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 H2AFXP16104 143 aaPredicted RBP21.7■■□□□ 1.06
COL9A3-201ENST00000343916 TNNI2P48788 182 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 CSGALNACT2Q8N6G5 542 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 DUSP9Q99956 384 aaKnown RBP21.7■■□□□ 1.06
COL9A3-201ENST00000343916 FECHP22830 423 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 TCP10Q12799 353 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 CCDC96Q2M329 555 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 ZNF771Q7L3S4 317 aaPredicted RBP21.7■■□□□ 1.06
COL9A3-201ENST00000343916 MB21D1Q8N884 522 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 GJA10Q969M2 543 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 TEKT1Q969V4 418 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 CALML4Q96GE6 196 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 LRWD1Q9UFC0 647 aa21.7■■□□□ 1.06
COL9A3-201ENST00000343916 TTC26A0AVF1 554 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 GRB10Q13322 594 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 ANKRD40Q6AI12 368 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 CHP1Q99653 195 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 C7orf25Q9BPX7 421 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 THAP9Q9H5L6 903 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 MAGEF1Q9HAY2 307 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 LGALS16A8MUM7 142 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 hCG_1984214I3L0E3 225 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 NKRFO15226 690 aaKnown RBP eCLIP21.69■■□□□ 1.06
COL9A3-201ENST00000343916 CLCN6P51797 869 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 MSL1Q68DK7 614 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 TMTC1Q8IUR5 882 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 KIAA0825Q8IV33 1275 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 NLGN1Q8N2Q7 840 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 ZNF713Q8N859 430 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-201ENST00000343916 SWAP70Q9UH65 585 aa21.69■■□□□ 1.06
COL9A3-201ENST00000343916 PNMA6FA0A0J9YX94 578 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 B4DLN1 442 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 USP17L10C9JJH3 530 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 MMP10P09238 476 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 EEF1GP26641 437 aaKnown RBP21.68■■□□□ 1.06
COL9A3-201ENST00000343916 PPP2R3AQ06190 1150 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 ZNF507Q8TCN5 953 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 NUDT12Q9BQG2 462 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 DNAJC18Q9H819 358 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 BLOC1S4Q9NUP1 217 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 MAGEC2Q9UBF1 373 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-201ENST00000343916 EFCAB8A8MWE9 144 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 MCM6Q14566 821 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 CYP26C1Q6V0L0 522 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 KIAA0895Q8NCT3 520 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 P2RX5Q93086 422 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 ZNF622Q969S3 477 aaKnown RBP eCLIP21.68■■□□□ 1.06
COL9A3-201ENST00000343916 DHTKD1Q96HY7 919 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-201ENST00000343916 UIMC1Q96RL1 719 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 SLC39A2Q9NP94 309 aa21.68■■□□□ 1.06
COL9A3-201ENST00000343916 HLA-DOAP06340 250 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 ALDH1B1P30837 517 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 CRKP46108 304 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 TRIM14Q14142 442 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 ZNF569Q5MCW4 686 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 HHIPL2Q6UWX4 724 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 DYMQ7RTS9 669 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 PNMA5Q96PV4 448 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 SLF1Q9BQI6 1058 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 TUBGCP2Q9BSJ2 902 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 KIF5CO60282 957 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 CCNE1P24864 410 aa21.67■■□□□ 1.06
COL9A3-201ENST00000343916 RXRBP28702 533 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 KLK7P49862 253 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 AMPD3Q01432 767 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 CCDC47Q96A33 483 aaKnown RBP21.66■■□□□ 1.06
COL9A3-201ENST00000343916 RIC8AQ9NPQ8 531 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 ZNF219Q9P2Y4 722 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-201ENST00000343916 MYMKA6NI61 221 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 SV2BQ7L1I2 683 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 ZSWIM4Q9H7M6 989 aa21.66■■□□□ 1.06
COL9A3-201ENST00000343916 RGS17Q9UGC6 210 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-201ENST00000343916 QSER1Q2KHR3 1735 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 FXR2P51116 673 aaKnown RBP eCLIP21.65■■□□□ 1.06
COL9A3-201ENST00000343916 ORC2Q13416 577 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-201ENST00000343916 TMEM266Q2M3C6 531 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 TEX35Q5T0J7 233 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 LARP4BQ92615 738 aaKnown RBP21.65■■□□□ 1.06
COL9A3-201ENST00000343916 CDK5RAP3Q96JB5 506 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 CNOT6LQ96LI5 555 aaKnown RBP21.65■■□□□ 1.06
COL9A3-201ENST00000343916 RBM5P52756 815 aaKnown RBP eCLIP21.65■■□□□ 1.066e-7■■■□□ 17.2
COL9A3-201ENST00000343916 KCNK18Q7Z418 384 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 SNX29Q8TEQ0 813 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 MASTLQ96GX5 879 aa21.65■■□□□ 1.06
COL9A3-201ENST00000343916 TMX4Q9H1E5 349 aaPredicted RBP21.65■■□□□ 1.06
COL9A3-201ENST00000343916 LUC7L2Q9Y383 392 aaKnown RBP21.65■■□□□ 1.06
COL9A3-201ENST00000343916 MYH4Q9Y623 1939 aa21.64■■□□□ 1.06
COL9A3-201ENST00000343916 DDTLA6NHG4 134 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-201ENST00000343916 ZBTB5O15062 677 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 PDE6BP35913 854 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 AGPAT5Q9NUQ2 364 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 A0A1W2PQC6 194 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 BICDL2A1A5D9 508 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 TFRCP02786 760 aaKnown RBP21.64■■□□□ 1.05
COL9A3-201ENST00000343916 CLK2P49760 499 aaKnown RBP21.64■■□□□ 1.05
COL9A3-201ENST00000343916 GABPB1Q06547 395 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-201ENST00000343916 SEMA3FQ13275 785 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 GPATCH4Q5T3I0 446 aaKnown RBP21.64■■□□□ 1.05
COL9A3-201ENST00000343916 CNNM4Q6P4Q7 775 aa21.64■■□□□ 1.05
COL9A3-201ENST00000343916 KRT222Q8N1A0 295 aa21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms