RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 ST7Q9NRC1 585 aa16.68■□□□□ 0.26
VIPAS39-202ENST00000343765 PUF60Q9UHX1 559 aaKnown RBP16.68■□□□□ 0.26
VIPAS39-202ENST00000343765 PPP1R11O60927 126 aaPredicted RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 SEC31AO94979 1220 aaKnown RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 EEF1GP26641 437 aaKnown RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 SMARCA1P28370 1054 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 SHMT1P34896 483 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 TCP10Q12799 353 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 KIF4BQ2VIQ3 1234 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 CDC42EP5Q6NZY7 148 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 CDK5RAP3Q96JB5 506 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 TUBGCP2Q9BSJ2 902 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 JMJD4Q9H9V9 463 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 PCDHAC2Q9Y5I4 1007 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 KLRG2A4D1S0 409 aaPredicted RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 GRB10Q13322 594 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 SHROOM1Q2M3G4 852 aaPredicted RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 ZFPM1Q8IX07 1006 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 CNOT6LQ96LI5 555 aaKnown RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 PCMTD1Q96MG8 357 aaPredicted RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 DBNDD1Q9H9R9 158 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 MAGEF1Q9HAY2 307 aa16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 ARGLU1Q9NWB6 273 aaPredicted RBP16.67■□□□□ 0.26
VIPAS39-202ENST00000343765 ESYT2A0FGR8 921 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 NKRFO15226 690 aaKnown RBP eCLIP16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 SRGNP10124 158 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 MTIF2P46199 727 aaKnown RBP16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 ZNF543Q08ER8 600 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 KRT27Q7Z3Y8 459 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 DHTKD1Q96HY7 919 aaPredicted RBP16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 C7orf25Q9BPX7 421 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 TRIM10Q9UDY6 481 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 TFR2Q9UP52 801 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 LUC7L2Q9Y383 392 aaKnown RBP16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 IGKV6D-41A0A0C4DH26 115 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 USP17L10C9JJH3 530 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 EDIL3O43854 480 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 FECHP22830 423 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 CCNE1P24864 410 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 AMPD3Q01432 767 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 TMCO3Q6UWJ1 677 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 SV2BQ7L1I2 683 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 KIAA0895Q8NCT3 520 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 MTMR9Q96QG7 549 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 NUDT12Q9BQG2 462 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 ZNF219Q9P2Y4 722 aaPredicted RBP16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 PLIN4Q96Q06 1357 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 ERCC3P19447 782 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 TMEM266Q2M3C6 531 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 MSL1Q68DK7 614 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 ZNF507Q8TCN5 953 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 SNX29Q8TEQ0 813 aa16.66■□□□□ 0.26
VIPAS39-202ENST00000343765 MYMKA6NI61 221 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 SNHG28P0DPA3 235 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 IDEP14735 1019 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 TRIM21P19474 475 aaKnown RBP16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 OR8K1Q8NGG5 319 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 TEKT1Q969V4 418 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 PNMA5Q96PV4 448 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 BLOC1S4Q9NUP1 217 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 PNMA6FA0A0J9YX94 578 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 BICDL2A1A5D9 508 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 CTAGE9A4FU28 777 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 MARCH6O60337 910 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 HLA-DOAP06340 250 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 DMTNQ08495 405 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 TBC1D8BQ0IIM8 1120 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 APOBEC3HQ6NTF7 200 aaKnown RBP16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 TMC4Q7Z404 712 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 KIAA0825Q8IV33 1275 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 ZNF622Q969S3 477 aaKnown RBP eCLIP16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 AGPAT5Q9NUQ2 364 aa16.65■□□□□ 0.26
VIPAS39-202ENST00000343765 ADAMTSL1Q8N6G6 1762 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 NDUFA10O95299 355 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 ARHGAP25P42331 645 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 RBM5P52756 815 aaKnown RBP eCLIP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 TSR1Q2NL82 804 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 CNNM4Q6P4Q7 775 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 LARP4BQ92615 738 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 GOLGA1Q92805 767 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 NOC4LQ9BVI4 516 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 GUCA1BQ9UMX6 200 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 FHOD1Q9Y613 1164 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 EPN1Q9Y6I3 576 aaPredicted RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 hCG_1984214I3L0E3 225 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 DNM2P50570 870 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 BMS1Q14692 1282 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 KCNK18Q7Z418 384 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 COL23A1Q86Y22 540 aaPredicted RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 GPIHBP1Q8IV16 184 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 ZNF713Q8N859 430 aaPredicted RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 SWAP70Q9UH65 585 aa16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 REXO2Q9Y3B8 237 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-202ENST00000343765 PNMA6AP0CW24 399 aaPredicted RBP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 NPR1P16066 1061 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 CHMP4BP1P59074 171 aa16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 RSRC2Q7L4I2 434 aaKnown RBP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 NOC3LQ8WTT2 800 aaKnown RBP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 TMX4Q9H1E5 349 aaPredicted RBP16.63■□□□□ 0.25
VIPAS39-202ENST00000343765 SEMA6BQ9H3T3 888 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms