RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PTPREP23469 700 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 CXCR5P32302 372 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 KIF11P52732 1056 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 INF2Q27J81 1249 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 LARP4BQ92615 738 aaKnown RBP5.25□□□□□ -1.57
CSMD3-203ENST00000343508 GBP5Q96PP8 586 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 TMEM2Q9UHN6 1383 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 FKBP3Q00688 224 aaKnown RBP5.25□□□□□ -1.57
CSMD3-203ENST00000343508 IL9RQ01113 521 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 LRRC63Q05C16 580 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 PSMD2Q13200 908 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 MAP3K21Q5TCX8 1036 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 TTLL7Q6ZT98 887 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 NEK8Q86SG6 692 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 STAG1Q8WVM7 1258 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 TUBB6Q9BUF5 446 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 METTL14Q9HCE5 456 aaKnown RBP5.25□□□□□ -1.57
CSMD3-203ENST00000343508 VCX3AQ9NNX9 186 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 NOP53Q9NZM5 478 aaKnown RBP5.25□□□□□ -1.57
CSMD3-203ENST00000343508 BCAP29Q9UHQ4 241 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 PASKQ96RG2 1323 aa5.25□□□□□ -1.57
CSMD3-203ENST00000343508 KRT31Q15323 416 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PPP4R3CPQ6ZMV5 832 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PIK3C2BO00750 1634 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 LMNB1P20700 586 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CCDC14Q49A88 953 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 HERC4Q5GLZ8 1057 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PHLDB3Q6NSJ2 640 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 REXO1Q8N1G1 1221 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ANKARQ7Z5J8 1434 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PRPF3O43395 683 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 TECP42680 631 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 THAP12O43422 761 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PHKG2P15735 406 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 MSANTD4Q8NCY6 345 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 SH3GL3Q99963 347 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ZSWIM5Q9P217 1185 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 NFU1Q9UMS0 254 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 A0A1B0GTH6 734 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ATP5HO75947 161 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 MMEP08473 750 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 IL2RBP14784 551 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 HHATQ5VTY9 493 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 RNF168Q8IYW5 571 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 TXLNGQ9NUQ3 528 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CTTNBP2NLQ9P2B4 639 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 COL3A1P02461 1466 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CFAP73A6NFT4 308 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ERVV-2B6SEH9 535 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PLA2G4AP47712 749 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 BEND6Q5SZJ8 279 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ARMC2Q8NEN0 867 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 LSM14BQ9BX40 385 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 NIP7Q9Y221 180 aaKnown RBP eCLIP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 DAAM1Q9Y4D1 1078 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 FMN2Q9NZ56 1722 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 MOCS3O95396 460 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 EHHADHQ08426 723 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 LGSNQ5TDP6 509 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 BBOF1Q8ND07 529 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ATP2A3Q93084 1043 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 WDR24Q96S15 920 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PUS7LQ9H0K6 701 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 NDST4Q9H3R1 872 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ARMCX3Q9UH62 379 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 NOL3O60936 208 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PDE8BO95263 885 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 OR52Z1P0C646 297 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 LMNB2Q03252 620 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CFAP157Q5JU67 520 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CCDC13Q8IYE1 715 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 SLFN12Q8IYM2 578 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 DISC1Q9NRI5 854 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 TUBE1Q9UJT0 475 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CHD2O14647 1828 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 EEF2P13639 858 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 EXOC3L4Q17RC7 722 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 LIN9Q5TKA1 542 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PARP9Q8IXQ6 854 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 SETDB2Q96T68 719 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 FUT8Q9BYC5 575 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CRB1P82279 1406 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PDE6AP16499 860 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PTPN21Q16825 1174 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 MAP7D1Q3KQU3 841 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 GRAMD1CQ8IYS0 662 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 PROM2Q8N271 834 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 MGARPQ8TDB4 240 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ZNF496Q96IT1 587 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 EPSTI1Q96J88 318 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 Q9H521 79 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 HSP90AA5PQ58FG0 334 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 HIBCHQ6NVY1 386 aaPredicted RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 LRRC8CQ8TDW0 803 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 MAK16Q9BXY0 300 aaKnown RBP5.24□□□□□ -1.57
CSMD3-203ENST00000343508 CXorf56Q9H5V9 222 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 SH3GLB2Q9NR46 395 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 SCOCQ9UIL1 159 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 ATP8A1Q9Y2Q0 1164 aa5.24□□□□□ -1.57
CSMD3-203ENST00000343508 SMCO2A6NFE2 343 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms