RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 NYAP2Q9P242 653 aa16.92■□□□□ 0.3
TPM3-208ENST00000341485 PP2D1A8MPX8 630 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 RAD21O60216 631 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 RPN1P04843 607 aaKnown RBP16.91■□□□□ 0.3
TPM3-208ENST00000341485 STAT6P42226 847 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 SHROOM1Q2M3G4 852 aaPredicted RBP16.91■□□□□ 0.3
TPM3-208ENST00000341485 KIF4BQ2VIQ3 1234 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 DTHD1Q6ZMT9 781 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 LRRN4CLQ8ND94 238 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 DISC1Q9NRI5 854 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 RWDD2AQ9UIY3 292 aa16.91■□□□□ 0.3
TPM3-208ENST00000341485 GOLGB1Q14789 3259 aaKnown RBP16.91■□□□□ 0.3
TPM3-208ENST00000341485 AKR1B15C9JRZ8 316 aaPredicted RBP16.9■□□□□ 0.3
TPM3-208ENST00000341485 H7C1D1 291 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 EGFRP00533 1210 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 GH2P01242 217 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 SMARCA1P28370 1054 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 ELF2Q15723 593 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 CCDC96Q2M329 555 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 NAALADL2Q58DX5 795 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 ZNF658Q5TYW1 1059 aaPredicted RBP16.9■□□□□ 0.3
TPM3-208ENST00000341485 IGSF22Q8N9C0 903 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 RRP36Q96EU6 259 aaKnown RBP16.9■□□□□ 0.3
TPM3-208ENST00000341485 CTAGE1Q96RT6 745 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 VAT1LQ9HCJ6 419 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 GPCPD1Q9NPB8 672 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 SEC63Q9UGP8 760 aaKnown RBP16.9■□□□□ 0.3
TPM3-208ENST00000341485 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.9■□□□□ 0.31e-10■■■□□ 17.4
TPM3-208ENST00000341485 SNHG28P0DPA3 235 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 RBL2Q08999 1139 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 FAM177A1Q8N128 213 aaPredicted RBP16.9■□□□□ 0.3
TPM3-208ENST00000341485 PANX2Q96RD6 677 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 UBA5Q9GZZ9 404 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 ZMYND12Q9H0C1 365 aa16.9■□□□□ 0.3
TPM3-208ENST00000341485 DICER1Q9UPY3 1922 aaKnown RBP16.89■□□□□ 0.29
TPM3-208ENST00000341485 PAK1Q13153 545 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 RASA3Q14644 834 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 ILDR2Q71H61 639 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 NELFBQ8WX92 580 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 RMND1Q9NWS8 449 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 LIMA1Q9UHB6 759 aaKnown RBP16.89■□□□□ 0.29
TPM3-208ENST00000341485 GDAQ9Y2T3 454 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 TBC1D12O60347 775 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 NAPAP54920 295 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 CBX1P83916 185 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 ZNF543Q08ER8 600 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 KRT31Q15323 416 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 FILIP1LQ4L180 1135 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 MIGA2Q7L4E1 593 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 CDAN1Q8IWY9 1227 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 MKL1Q969V6 931 aa16.89■□□□□ 0.29
TPM3-208ENST00000341485 SCAF8Q9UPN6 1271 aaKnown RBP16.89■□□□□ 0.29
TPM3-208ENST00000341485 SPDYE4A6NLX3 237 aa16.88■□□□□ 0.29
TPM3-208ENST00000341485 RRP1BQ14684 758 aaKnown RBP16.88■□□□□ 0.29
TPM3-208ENST00000341485 MTF1Q14872 753 aa16.88■□□□□ 0.29
TPM3-208ENST00000341485 GPATCH4Q5T3I0 446 aaKnown RBP16.88■□□□□ 0.29
TPM3-208ENST00000341485 PPFIBP1Q86W92 1011 aa16.88■□□□□ 0.29
TPM3-208ENST00000341485 GPC2Q8N158 579 aa16.88■□□□□ 0.29
TPM3-208ENST00000341485 ZNF397Q8NF99 534 aaPredicted RBP16.88■□□□□ 0.29
TPM3-208ENST00000341485 CCSER1Q9C0I3 900 aa16.88■□□□□ 0.29
TPM3-208ENST00000341485 HACL1Q9UJ83 578 aa16.88■□□□□ 0.29
TPM3-208ENST00000341485 GOLGA6L9A6NEM1 432 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 SOWAHDA6NJG2 315 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 LAD1O00515 517 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 CCT6AP40227 531 aaKnown RBP16.87■□□□□ 0.29
TPM3-208ENST00000341485 PRPHP41219 470 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 PRCPP42785 496 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 KMT5BQ4FZB7 885 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 SLFN13Q68D06 897 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 KRT25Q7Z3Z0 450 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 LRRC15Q8TF66 581 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 DCAF4Q8WV16 495 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 CPLX3Q8WVH0 158 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 DESI2Q9BSY9 194 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 ITIH6Q6UXX5 1313 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 SMCO2A6NFE2 343 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 LRRC10BA6NIK2 292 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 MFAP3LO75121 409 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 SLC1A4P43007 532 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 JAG1P78504 1218 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 KCTD1Q719H9 257 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 CCDC12Q8WUD4 166 aaPredicted RBP16.87■□□□□ 0.29
TPM3-208ENST00000341485 PIGSQ96S52 555 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 PLIN2Q99541 437 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 RIOX1Q9H6W3 641 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 RNF181Q9P0P0 153 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 MAPK8IP1Q9UQF2 711 aa16.87■□□□□ 0.29
TPM3-208ENST00000341485 SBF1O95248 1867 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 KLRC4O43908 158 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 UBA7P41226 1012 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 COPB1P53618 953 aaKnown RBP16.86■□□□□ 0.29
TPM3-208ENST00000341485 NONOQ15233 471 aaKnown RBP eCLIP16.86■□□□□ 0.291e-7■■■■□ 26.2
TPM3-208ENST00000341485 RAD9BQ6WBX8 426 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 RASSF8Q8NHQ8 419 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 WDR24Q96S15 920 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 FEZ1Q99689 392 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 ARHGEF10LQ9HCE6 1279 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 C6orf50Q9HD87 102 aa16.86■□□□□ 0.29
TPM3-208ENST00000341485 ASTN2O75129 1339 aaPredicted RBP16.86■□□□□ 0.29
TPM3-208ENST00000341485 URI1O94763 535 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms