RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CRKP46108 304 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ERVK-24P63145 666 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ZNF397Q8NF99 534 aaPredicted RBP11.6□□□□□ -0.55
LIMA1-201ENST00000341247 TRIM9Q9C026 710 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 RIOX1Q9H6W3 641 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 MAGEC2Q9UBF1 373 aaPredicted RBP11.6□□□□□ -0.55
LIMA1-201ENST00000341247 LIMA1Q9UHB6 759 aaKnown RBP11.6□□□□□ -0.55
LIMA1-201ENST00000341247 SLX4Q8IY92 1834 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 HLA-DOAP06340 250 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 NPR1P16066 1061 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 RAD51AP2Q09MP3 1159 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 IKQ13123 557 aaPredicted RBP11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ZNF569Q5MCW4 686 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 NLGN1Q8N2Q7 840 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 CALML4Q96GE6 196 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 PANX2Q96RD6 677 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ZNF646O15015 1829 aaPredicted RBP11.6□□□□□ -0.55
LIMA1-201ENST00000341247 DDTLA6NHG4 134 aaPredicted RBP11.6□□□□□ -0.55
LIMA1-201ENST00000341247 LRRC41Q15345 812 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 SYCP1Q15431 976 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ANKRD40Q6AI12 368 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 FCHSD1Q86WN1 690 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 CNGA4Q8IV77 575 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ABHD10Q9NUJ1 306 aa11.6□□□□□ -0.55
LIMA1-201ENST00000341247 ZNF543Q08ER8 600 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 SNX29Q8TEQ0 813 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 PUF60Q9UHX1 559 aaKnown RBP11.59□□□□□ -0.55
LIMA1-201ENST00000341247 TTC26A0AVF1 554 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 H7C1D1 291 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 MTIF2P46199 727 aaKnown RBP11.59□□□□□ -0.55
LIMA1-201ENST00000341247 CACNB1Q02641 598 aaPredicted RBP11.59□□□□□ -0.55
LIMA1-201ENST00000341247 SPAG1Q07617 926 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 ASPRV1Q53RT3 343 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 CT47A1Q5JQC4 288 aaPredicted RBP11.59□□□□□ -0.55
LIMA1-201ENST00000341247 TRIM34Q9BYJ4 488 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 TBC1D7Q9P0N9 293 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 TRIM10Q9UDY6 481 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 SIPA1L1O43166 1804 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 LAD1O00515 517 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 RHOBTB3O94955 611 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 KCNK18Q7Z418 384 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 C2CD5Q86YS7 1000 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 GIMAP8Q8ND71 665 aaPredicted RBP11.59□□□□□ -0.55
LIMA1-201ENST00000341247 GLIS3Q8NEA6 775 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 DNAJC18Q9H819 358 aa11.59□□□□□ -0.55
LIMA1-201ENST00000341247 ALDH1B1P30837 517 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 PRPHP41219 470 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 GRB10Q13322 594 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 CCDC47Q96A33 483 aaKnown RBP11.58□□□□□ -0.56
LIMA1-201ENST00000341247 MYMKA6NI61 221 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 ZBTB22O15209 634 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 EEF2P13639 858 aaKnown RBP11.58□□□□□ -0.56
LIMA1-201ENST00000341247 SLC1A4P43007 532 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 PPP2R3AQ06190 1150 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 SEPT2Q15019 361 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 USH1GQ495M9 461 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 SV2BQ7L1I2 683 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 DUSP9Q99956 384 aaKnown RBP11.58□□□□□ -0.56
LIMA1-201ENST00000341247 TUBGCP2Q9BSJ2 902 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 PSTPIP2Q9H939 334 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 PNMA6FA0A0J9YX94 578 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 SEC31AO94979 1220 aaKnown RBP11.58□□□□□ -0.56
LIMA1-201ENST00000341247 TMEM266Q2M3C6 531 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 TTI2Q6NXR4 508 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 SPICE1Q8N0Z3 855 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 MB21D1Q8N884 522 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 KIFC2Q96AC6 838 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 ST7Q9NRC1 585 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 AGPAT5Q9NUQ2 364 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 GUCA1BQ9UMX6 200 aa11.58□□□□□ -0.56
LIMA1-201ENST00000341247 KIF5CO60282 957 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 TRIM21P19474 475 aaKnown RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 PDE6BP35913 854 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 CLCN6P51797 869 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 ECM1Q16610 540 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 AOC3Q16853 763 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 KIF4BQ2VIQ3 1234 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 KIAA0895Q8NCT3 520 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 P2RX5Q93086 422 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 MASTLQ96GX5 879 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 CNOT6LQ96LI5 555 aaKnown RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 AK8Q96MA6 479 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 PNMA5Q96PV4 448 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 ZMYND15Q9H091 742 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 ZHX3Q9H4I2 956 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 TDRD3Q9H7E2 651 aaKnown RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 BLOC1S4Q9NUP1 217 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 DDX25Q9UHL0 483 aaKnown RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 GOLGA6L9A6NEM1 432 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 LRRC10BA6NIK2 292 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 TBC1D8BQ0IIM8 1120 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 KCNB1Q14721 858 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 CERKLQ49MI3 558 aaPredicted RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 SLC35F6Q8N357 371 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 POLD4Q9HCU8 107 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 ZNF446Q9NWS9 450 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 MYH8P13535 1937 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 LARP4BQ92615 738 aaKnown RBP11.57□□□□□ -0.56
LIMA1-201ENST00000341247 MTMR9Q96QG7 549 aa11.57□□□□□ -0.56
LIMA1-201ENST00000341247 NOC4LQ9BVI4 516 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms