RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FAM173BQ6P4H8 233 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 MCF2L2Q86YR7 1114 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 KLHL7Q8IXQ5 586 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 HVCN1Q96D96 273 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 GDAP1L1Q96MZ0 367 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 SH2B2O14492 632 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 HSPA1LP34931 641 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 KRT39Q6A163 491 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 ANKRD35Q8N283 1001 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 PNMA1Q8ND90 353 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 DBNLQ9UJU6 430 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 MROH2AA6NES4 1674 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 NDUFA10O95299 355 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 ATF2P15336 505 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 TPD52P55327 224 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 C6orf118Q5T5N4 469 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 TRMT44Q8IYL2 757 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 RSAD2Q8WXG1 361 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 CCT6BQ92526 530 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 SPATS2LQ9NUQ6 558 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 ERVV-1B6SEH8 477 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 PODXLO00592 558 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 TRAPPC3LQ5T215 181 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 ZNF277Q9NRM2 450 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 EPS15L1Q9UBC2 864 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 KCNJ14Q9UNX9 436 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 BACH1O14867 736 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 NBPF10Q6P3W6 841 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 PI4K2BQ8TCG2 481 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 CCDC97Q96F63 343 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 HAUS8Q9BT25 410 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 HADHQ16836 314 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 MMS22LQ6ZRQ5 1243 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 PSTPIP2Q9H939 334 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 DIP2AQ14689 1571 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 CCDC17Q96LX7 622 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 LRRD1A4D1F6 860 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 FAM26FQ5R3K3 315 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 MFAP3LO75121 409 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 PPANQ9NQ55 473 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 MYO5BQ9ULV0 1848 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 KIF1CO43896 1103 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 CTDSPL2Q05D32 466 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 CASP8Q14790 479 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 PPP1R18Q6NYC8 613 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 CCDC13Q8IYE1 715 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 RASEFQ8IZ41 740 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 FAM96AQ9H5X1 160 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 NOC2LQ9Y3T9 749 aaKnown RBP11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 CLIC4Q9Y696 253 aa11.23□□□□□ -0.61
CCDC88A-202ENST00000336838 MYH10P35580 1976 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 ALDH1B1P30837 517 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 GUCY2DQ02846 1103 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 RHOT2Q8IXI1 618 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 MORC4Q8TE76 937 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 FMO2Q99518 471 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 NSFL1CQ9UNZ2 370 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 CYP21A2P08686 494 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 CEBPAP49715 358 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 ASPHQ12797 758 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 TNFAIP1Q13829 316 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 BRDTQ58F21 947 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 C11orf57Q6ZUT1 292 aaPredicted RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 INTS9Q9NV88 658 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 MIF4GDA9UHW6 222 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 CRCPO75575 148 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 LGR6Q9HBX8 967 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 UFL1O94874 794 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 PPP2R5AQ15172 486 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 FAM178BQ8IXR5 827 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 CEP120Q8N960 986 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 MRPL11Q9Y3B7 192 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 SLIT1O75093 1534 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 HNRNPCL1O60812 293 aaKnown RBP11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 NR1D1P20393 614 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 GJC1P36383 396 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 ADCY8P40145 1251 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 ADAM9Q13443 819 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 FBXO38Q6PIJ6 1188 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 LRRC8CQ8TDW0 803 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 MAPK8IP1Q9UQF2 711 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 RIPOR2Q9Y4F9 1068 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 RINT1Q6NUQ1 792 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 TMEM206Q9H813 350 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 BAIAP2L1Q9UHR4 511 aa11.22□□□□□ -0.61
CCDC88A-202ENST00000336838 STAM2O75886 525 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 TFAP4Q01664 338 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 SLC35F6Q8N357 371 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 CDKL2Q92772 493 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 FAM129AQ9BZQ8 928 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 MAN1B1Q9UKM7 699 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 DCTN3O75935 186 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 CD2BP2O95400 341 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 ADD2P35612 726 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 TCP11X2Q5H9J9 407 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 PARP3Q9Y6F1 533 aa11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 AFDNP55196 1824 aaKnown RBP11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 IL6STP40189 918 aaPredicted RBP11.21□□□□□ -0.61
CCDC88A-202ENST00000336838 MRPS9P82933 396 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms