RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 MAGEC2Q9UBF1 373 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 DNM2P50570 870 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 SNCBQ16143 134 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 WLSQ5T9L3 541 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 CSGALNACT2Q8N6G5 542 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 CEP120Q8N960 986 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 CASKIN2Q8WXE0 1202 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 TBC1D31Q96DN5 1066 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 MTMR8Q96EF0 704 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 KRT12Q99456 494 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 GOLGA6L7A0A1B0GV03 622 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 FAM107AO95990 144 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 STAT6P42226 847 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 CLNS1AP54105 237 aaKnown RBP14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 ZBED6P86452 979 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 ATP2C1P98194 919 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 RASSF7Q02833 373 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 ITGB3BPQ13352 177 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 PTPROQ16827 1216 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 ACCSLQ4AC99 568 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 IFNL2Q8IZJ0 200 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 LCORLQ8N3X6 602 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 RASSF8Q8NHQ8 419 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 ATP6V1G3Q96LB4 118 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 DUSP9Q99956 384 aaKnown RBP14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 PLAAQ9Y263 795 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 HYOU1Q9Y4L1 999 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 SPEF2Q9C093 1822 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 TNS3Q68CZ2 1445 aa14.92□□□□□ -0.02
CCDC88C-201ENST00000331194 LAMB4A4D0S4 1761 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 MYH7P12883 1935 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 AKAP11Q9UKA4 1901 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 PAFAH1B1P43034 410 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 HLFQ16534 295 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 ZNF662Q6ZS27 426 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 YTHDF3Q7Z739 585 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 TTLL11Q8NHH1 800 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 ZNF526Q8TF50 670 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 ATXN2Q99700 1313 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 MTIF2P46199 727 aaKnown RBP14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 KIF11P52732 1056 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 CCDC170Q8IYT3 715 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 LRRC15Q8TF66 581 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 KRT23Q9C075 422 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 GREM2Q9H772 168 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 CNNM1Q9NRU3 951 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 RIPOR2Q9Y4F9 1068 aa14.91□□□□□ -0.02
CCDC88C-201ENST00000331194 AKR1B10O60218 316 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 USO1O60763 962 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 GCFC2P16383 781 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 CDC25CP30307 473 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 GFPT1Q06210 699 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 TTI2Q6NXR4 508 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 LRRC4CQ9HCJ2 640 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 MYH6P13533 1939 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 FTCDO95954 541 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 ANKRD40Q6AI12 368 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 DDX42Q86XP3 938 aaKnown RBP eCLIP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 IFT20Q8IY31 132 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 RASGRP4Q8TDF6 673 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 CNOT6LQ96LI5 555 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 NOC4LQ9BVI4 516 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 TNKSO95271 1327 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 CYP2D7A0A087X1C5 515 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 DCDC2CA8MYV0 355 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 PCCAP05165 728 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 EEF1GP26641 437 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 NAA25Q14CX7 972 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 NAALADL2Q58DX5 795 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 KLHDC7AQ5VTJ3 777 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 SPATS2Q86XZ4 545 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 KLHL7Q8IXQ5 586 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 SDR42E1Q8WUS8 393 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 LEMD3Q9Y2U8 911 aa14.9□□□□□ -0.02
CCDC88C-201ENST00000331194 PPP1R12AO14974 1030 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 MIIPQ5JXC2 388 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 TNFRSF25Q93038 417 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 GDF3Q9NR23 364 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 PKD1L3Q7Z443 1732 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 STRCQ7RTU9 1775 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 PHF20L1A8MW92 1017 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 TCP1P17987 556 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 ITGA6P23229 1130 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 FUT2Q10981 343 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 SEMA3FQ13275 785 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 ZNF572Q7Z3I7 529 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 CALR3Q96L12 384 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 RNF26Q9BY78 433 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 CNNM2Q9H8M5 875 aa14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 CNOT8Q9UFF9 292 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-201ENST00000331194 KLRC4O43908 158 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 FCER1AP12319 257 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 XBP1P17861 261 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 MAGEA1P43355 309 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 BYSLQ13895 437 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 ANKRD20A8PQ5CZ79 823 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 CCDC155Q8N6L0 562 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 LPIN2Q92539 896 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 PAGR1Q9BTK6 254 aa14.88□□□□□ -0.03
CCDC88C-201ENST00000331194 MMRN2Q9H8L6 949 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms