RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZSCAN20P17040 1043 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 CCDC96Q2M329 555 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 TMTC1Q8IUR5 882 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 MTMR9Q96QG7 549 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 THAP9Q9H5L6 903 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 LGALS16A8MUM7 142 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 NKRFO15226 690 aaKnown RBP eCLIP20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 ZNF543Q08ER8 600 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 TCP10Q12799 353 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 GRB10Q13322 594 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 MCM6Q14566 821 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 APOBEC3HQ6NTF7 200 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 CYP26C1Q6V0L0 522 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 TMC4Q7Z404 712 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 COL23A1Q86Y22 540 aaPredicted RBP20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 C7orf25Q9BPX7 421 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 SLC39A2Q9NP94 309 aa20.57■□□□□ 0.88
SHKBP1-201ENST00000291842 KIF5CO60282 957 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 FECHP22830 423 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 TEX35Q5T0J7 233 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 DYMQ7RTS9 669 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 NUDT12Q9BQG2 462 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 ANKRD31Q8N7Z5 1873 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 LRRC37AA6NMS7 1700 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 USP17L10C9JJH3 530 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 EEF1GP26641 437 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 KLK7P49862 253 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 ZNF507Q8TCN5 953 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 P2RX5Q93086 422 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 DHTKD1Q96HY7 919 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 TUBGCP2Q9BSJ2 902 aa20.56■□□□□ 0.88
SHKBP1-201ENST00000291842 NPR1P16066 1061 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 TRIM14Q14142 442 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 MSL1Q68DK7 614 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 TEKT1Q969V4 418 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 CCDC47Q96A33 483 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 PNMA5Q96PV4 448 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 MAGEF1Q9HAY2 307 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 BLOC1S4Q9NUP1 217 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 SUGT1Q9Y2Z0 365 aa20.55■□□□□ 0.88
SHKBP1-201ENST00000291842 PNMA6FA0A0J9YX94 578 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 TFRCP02786 760 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 CCNE1P24864 410 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 KIAA0825Q8IV33 1275 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 KIAA0895Q8NCT3 520 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 ZNF622Q969S3 477 aaKnown RBP eCLIP20.54■□□□□ 0.882e-8■□□□□ 10.5
SHKBP1-201ENST00000291842 ZNF219Q9P2Y4 722 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 MYMKA6NI61 221 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 AMPD3Q01432 767 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 SV2BQ7L1I2 683 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 CDK5RAP3Q96JB5 506 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 CNOT6LQ96LI5 555 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 SWAP70Q9UH65 585 aa20.54■□□□□ 0.88
SHKBP1-201ENST00000291842 hCG_1984214I3L0E3 225 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 SLC35F6Q8N357 371 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 ZNF713Q8N859 430 aaPredicted RBP20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 LUC7L2Q9Y383 392 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 HLA-DOAP06340 250 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 MMP10P09238 476 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 TMEM266Q2M3C6 531 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 RIC8AQ9NPQ8 531 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 AGPAT5Q9NUQ2 364 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 TRIM10Q9UDY6 481 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 PUF60Q9UHX1 559 aaKnown RBP20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 TFR2Q9UP52 801 aa20.53■□□□□ 0.88
SHKBP1-201ENST00000291842 SEC31AO94979 1220 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 CRKP46108 304 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 MTIF2P46199 727 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 RBM5P52756 815 aaKnown RBP eCLIP20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 KCNK18Q7Z418 384 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 KRT222Q8N1A0 295 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 NLGN1Q8N2Q7 840 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 OR8K1Q8NGG5 319 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 SNX29Q8TEQ0 813 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 SEMA6BQ9H3T3 888 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 DNAJC18Q9H819 358 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 ALDH1B1P30837 517 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 ARHGAP25P42331 645 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 FXR2P51116 673 aaKnown RBP eCLIP20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 KIF4BQ2VIQ3 1234 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 LARP4BQ92615 738 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 ST7Q9NRC1 585 aa20.52■□□□□ 0.88
SHKBP1-201ENST00000291842 BRWD3Q6RI45 1802 aa20.52■□□□□ 0.87
SHKBP1-201ENST00000291842 BICDL2A1A5D9 508 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 IDEP14735 1019 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 ERCC3P19447 782 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 DNM2P50570 870 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 TBC1D8BQ0IIM8 1120 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 CNNM4Q6P4Q7 775 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 HHIPL2Q6UWX4 724 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 PCMTD1Q96MG8 357 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 REXO2Q9Y3B8 237 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 EPN1Q9Y6I3 576 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 A0A1W2PQC6 194 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 NDUFA10O95299 355 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 TRIM21P19474 475 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 ECM1Q16610 540 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 RSRC2Q7L4I2 434 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 CUL5Q93034 780 aa20.51■□□□□ 0.87
SHKBP1-201ENST00000291842 NOC4LQ9BVI4 516 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms