RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 WHAMMP3Q1A5X7 153 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 SOGA3Q5TF21 947 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 ANKRD40Q6AI12 368 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 SP8Q8IXZ3 490 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 TBCKQ8TEA7 893 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 CCDC47Q96A33 483 aaKnown RBP16.1■□□□□ 0.17
HIF3A-202ENST00000244303 FAM163AQ96GL9 167 aaPredicted RBP16.1■□□□□ 0.17
HIF3A-202ENST00000244303 C7orf25Q9BPX7 421 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 ZCCHC17Q9NP64 241 aaKnown RBP16.1■□□□□ 0.17
HIF3A-202ENST00000244303 BIN2Q9UBW5 565 aaPredicted RBP16.1■□□□□ 0.17
HIF3A-202ENST00000244303 RAB21Q9UL25 225 aa16.1■□□□□ 0.17
HIF3A-202ENST00000244303 BRWD3Q6RI45 1802 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 CTAGE15A4D2H0 777 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 POTEB2H3BUK9 544 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 PPEF1O14829 653 aaPredicted RBP16.09■□□□□ 0.17
HIF3A-202ENST00000244303 RHOXF2BP0C7M4 288 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 CTAGE8P0CG41 777 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 KLK7P49862 253 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 RHBDL3P58872 404 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 HERVK_113P62684 666 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 TSR1Q2NL82 804 aaKnown RBP16.09■□□□□ 0.17
HIF3A-202ENST00000244303 CTAGE6Q86UF2 777 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 CTAGE4Q8IX94 777 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 TBC1D22AQ8WUA7 517 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 CNOT6LQ96LI5 555 aaKnown RBP16.09■□□□□ 0.17
HIF3A-202ENST00000244303 RHOXF2Q9BQY4 288 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 MMTAG2Q9BU76 263 aaKnown RBP16.09■□□□□ 0.17
HIF3A-202ENST00000244303 TTYH3Q9C0H2 523 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 AGPAT5Q9NUQ2 364 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 MYO6Q9UM54 1294 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 TFR2Q9UP52 801 aa16.09■□□□□ 0.17
HIF3A-202ENST00000244303 BICDL2A1A5D9 508 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 PLCG2P16885 1265 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 TRIM21P19474 475 aaKnown RBP16.08■□□□□ 0.17
HIF3A-202ENST00000244303 CYP2C19P33261 490 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 NCAPH2Q6IBW4 605 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 TMC4Q7Z404 712 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 SLF2Q8IX21 1173 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 HNRNPLLQ8WVV9 542 aaKnown RBP16.08■□□□□ 0.17
HIF3A-202ENST00000244303 UBA5Q9GZZ9 404 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 HAUS4Q9H6D7 363 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 TMEM260Q9NX78 707 aa16.08■□□□□ 0.17
HIF3A-202ENST00000244303 RASSF10A6NK89 507 aa16.08■□□□□ 0.16
HIF3A-202ENST00000244303 USP17L5A8MUK1 530 aa16.08■□□□□ 0.16
HIF3A-202ENST00000244303 TBC1D8BQ0IIM8 1120 aa16.08■□□□□ 0.16
HIF3A-202ENST00000244303 BEND6Q5SZJ8 279 aaPredicted RBP16.08■□□□□ 0.16
HIF3A-202ENST00000244303 REXO1Q8N1G1 1221 aaKnown RBP16.08■□□□□ 0.16
HIF3A-202ENST00000244303 HPS3Q969F9 1004 aa16.08■□□□□ 0.16
HIF3A-202ENST00000244303 GAKO14976 1311 aa16.08■□□□□ 0.16
HIF3A-202ENST00000244303 MAP2K7O14733 419 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 RIMBP2O15034 1052 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 TUBB4BP68371 445 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 MEA1Q16626 185 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 ENC1O14682 589 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 NKRFO15226 690 aaKnown RBP eCLIP16.07■□□□□ 0.16
HIF3A-202ENST00000244303 SMARCA1P28370 1054 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 TXKP42681 527 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 MTIF2P46199 727 aaKnown RBP16.07■□□□□ 0.16
HIF3A-202ENST00000244303 GTF2IP78347 998 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 AMPD3Q01432 767 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 MIIPQ5JXC2 388 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 CCDC122Q5T0U0 273 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 FAM114A1Q8IWE2 563 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 NOA1Q8NC60 698 aaKnown RBP16.07■□□□□ 0.16
HIF3A-202ENST00000244303 KIAA0895Q8NCT3 520 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 CALML4Q96GE6 196 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.07■□□□□ 0.16
HIF3A-202ENST00000244303 ATP6V0A2Q9Y487 856 aa16.07■□□□□ 0.16
HIF3A-202ENST00000244303 FRMPD2Q68DX3 1309 aaPredicted RBP16.07■□□□□ 0.16
HIF3A-202ENST00000244303 PSMD14O00487 310 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 NOC4LQ9BVI4 516 aaKnown RBP16.06■□□□□ 0.16
HIF3A-202ENST00000244303 NUP58Q9BVL2 599 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 ABCB6Q9NP58 842 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 HMGB2P26583 209 aaKnown RBP16.06■□□□□ 0.16
HIF3A-202ENST00000244303 VSNL1P62760 191 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 KRT83P78385 493 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 CNNM4Q6P4Q7 775 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 TRAPPC11Q7Z392 1133 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 PCMTD1Q96MG8 357 aaPredicted RBP16.06■□□□□ 0.16
HIF3A-202ENST00000244303 COA1Q9GZY4 146 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 RIOX1Q9H6W3 641 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 SLC39A2Q9NP94 309 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 HDAC6Q9UBN7 1215 aa16.06■□□□□ 0.16
HIF3A-202ENST00000244303 ESYT2A0FGR8 921 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 ERLIN1O75477 346 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 PDHBP11177 359 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 PPP1R2P41236 205 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 NOVP48745 357 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 GRB10Q13322 594 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 KIAA1328Q86T90 577 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 COL23A1Q86Y22 540 aaPredicted RBP16.05■□□□□ 0.16
HIF3A-202ENST00000244303 NLGN1Q8N2Q7 840 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 RETREG2Q8NC44 543 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 COA7Q96BR5 231 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 SEMA6BQ9H3T3 888 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 NHEJ1Q9H9Q4 299 aaPredicted RBP16.05■□□□□ 0.16
HIF3A-202ENST00000244303 SUGCTQ9HAC7 445 aa16.05■□□□□ 0.16
HIF3A-202ENST00000244303 ZNHIT6Q9NWK9 470 aaKnown RBP16.05■□□□□ 0.16
HIF3A-202ENST00000244303 DAGLAQ9Y4D2 1042 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms