RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 FCER1AP12319 257 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 LMAN1P49257 510 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 CDK8P49336 464 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 PAPD7Q5XG87 772 aaKnown RBP20.9■□□□□ 0.94
CPSF3-201ENST00000238112 EIF3CQ99613 913 aaKnown RBP20.9■□□□□ 0.94
CPSF3-201ENST00000238112 MCM3P25205 808 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 CKAP4Q07065 602 aaKnown RBP20.9■□□□□ 0.94
CPSF3-201ENST00000238112 GRAPQ13588 217 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 HSP90B2PQ58FF3 399 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 USP17L2Q6R6M4 530 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 GRAPLQ8TC17 118 aaPredicted RBP20.9■□□□□ 0.94
CPSF3-201ENST00000238112 TBCKQ8TEA7 893 aa20.9■□□□□ 0.94
CPSF3-201ENST00000238112 NAV1Q8NEY1 1877 aa20.89■□□□□ 0.94
CPSF3-201ENST00000238112 BTDP43251 543 aa20.89■□□□□ 0.94
CPSF3-201ENST00000238112 C16orf86Q6ZW13 317 aa20.89■□□□□ 0.94
CPSF3-201ENST00000238112 RPGRIP1Q96KN7 1286 aa20.89■□□□□ 0.94
CPSF3-201ENST00000238112 RTFDC1Q9BY42 306 aaPredicted RBP20.89■□□□□ 0.94
CPSF3-201ENST00000238112 VAT1LQ9HCJ6 419 aa20.89■□□□□ 0.94
CPSF3-201ENST00000238112 RASSF10A6NK89 507 aa20.89■□□□□ 0.93
CPSF3-201ENST00000238112 USP14P54578 494 aa20.89■□□□□ 0.93
CPSF3-201ENST00000238112 MIIPQ5JXC2 388 aa20.89■□□□□ 0.93
CPSF3-201ENST00000238112 REXO1Q8N1G1 1221 aaKnown RBP20.89■□□□□ 0.93
CPSF3-201ENST00000238112 NEDD1Q8NHV4 660 aa20.89■□□□□ 0.93
CPSF3-201ENST00000238112 A0A1W2PQJ5 194 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 SRGAP2O75044 1071 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 ORC2Q13416 577 aaPredicted RBP20.88■□□□□ 0.93
CPSF3-201ENST00000238112 NFIXQ14938 502 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 FIGNQ5HY92 759 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 SLC51AQ86UW1 340 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 ZSCAN29Q8IWY8 852 aaPredicted RBP20.88■□□□□ 0.93
CPSF3-201ENST00000238112 CCDC102AQ96A19 550 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 CAPZA3Q96KX2 299 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 ERGIC2Q96RQ1 377 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 MMS19Q96T76 1030 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 RNF216Q9NWF9 866 aaPredicted RBP20.88■□□□□ 0.93
CPSF3-201ENST00000238112 COBLL1Q53SF7 1204 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 SV2BQ7L1I2 683 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 PTF1AQ7RTS3 328 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 TEX11Q8IYF3 940 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 CAGE1Q8TC20 777 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 IQCDQ96DY2 449 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 PIGSQ96S52 555 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 LACRTQ9GZZ8 138 aa20.88■□□□□ 0.93
CPSF3-201ENST00000238112 BIN2Q9UBW5 565 aaPredicted RBP20.88■□□□□ 0.93
CPSF3-201ENST00000238112 SNED1Q8TER0 1413 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 N4BP1O75113 896 aaKnown RBP20.87■□□□□ 0.93
CPSF3-201ENST00000238112 TXKP42681 527 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 KIF5AQ12840 1032 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 SPA17Q15506 151 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 MAP9Q49MG5 647 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 POTEDQ86YR6 584 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 KIAA0895Q8NCT3 520 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 ARHGEF1Q92888 912 aaKnown RBP20.87■□□□□ 0.93
CPSF3-201ENST00000238112 CCDC42Q96M95 316 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 GPR101Q96P66 508 aaPredicted RBP20.87■□□□□ 0.93
CPSF3-201ENST00000238112 MMTAG2Q9BU76 263 aaKnown RBP20.87■□□□□ 0.93
CPSF3-201ENST00000238112 TSGA10Q9BZW7 698 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 SLC39A2Q9NP94 309 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 ANO9A1A5B4 782 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 RCCD1A6NED2 376 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 SMARCA1P28370 1054 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 CDK17Q00537 523 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 ZSCAN26Q16670 478 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 MUM1L1Q5H9M0 696 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 ZBTB9Q96C00 473 aa20.87■□□□□ 0.93
CPSF3-201ENST00000238112 MYH1P12882 1939 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 FAM71BQ8TC56 605 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 HPS3Q969F9 1004 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 CEP95Q96GE4 821 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 CDK5RAP3Q96JB5 506 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 FAN1Q9Y2M0 1017 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 MACROD2A1Z1Q3 448 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 PLCG2P16885 1265 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 VAV2P52735 878 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 CYP27A1Q02318 531 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 CALCRLQ16602 461 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 SECISBP2LQ93073 1101 aaKnown RBP20.86■□□□□ 0.93
CPSF3-201ENST00000238112 SEMA6BQ9H3T3 888 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 STK17AQ9UEE5 414 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 LRWD1Q9UFC0 647 aa20.86■□□□□ 0.93
CPSF3-201ENST00000238112 CCNL1Q9UK58 526 aaPredicted RBP20.86■□□□□ 0.93
CPSF3-201ENST00000238112 ESYT2A0FGR8 921 aa20.85■□□□□ 0.93
CPSF3-201ENST00000238112 LRRIQ3A6PVS8 624 aaPredicted RBP20.85■□□□□ 0.93
CPSF3-201ENST00000238112 IDEP14735 1019 aa20.85■□□□□ 0.93
CPSF3-201ENST00000238112 TMEM266Q2M3C6 531 aa20.85■□□□□ 0.93
CPSF3-201ENST00000238112 CENPPQ6IPU0 288 aa20.85■□□□□ 0.93
CPSF3-201ENST00000238112 MED4Q9NPJ6 270 aa20.85■□□□□ 0.93
CPSF3-201ENST00000238112 JADE2Q9NQC1 790 aa20.85■□□□□ 0.93
CPSF3-201ENST00000238112 GPR75-ASB3A0A0A6YYF3 556 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 TARSL2A2RTX5 802 aaKnown RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 GOLGA5Q8TBA6 731 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 PURBQ96QR8 312 aaKnown RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 UBA5Q9GZZ9 404 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 TMEM260Q9NX78 707 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 USO1O60763 962 aaKnown RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 FGFR1OPO95684 399 aaKnown RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 TNNT3P45378 269 aaPredicted RBP20.84■□□□□ 0.93
CPSF3-201ENST00000238112 CCDC96Q2M329 555 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 VWA3BQ502W6 1294 aa20.84■□□□□ 0.93
CPSF3-201ENST00000238112 IQCEQ6IPM2 695 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms