RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 CDK12Q9NYV4 1490 aaPredicted RBP20.3■□□□□ 0.84
CLIP2-201ENST00000223398 SHROOM2Q13796 1616 aa20.3■□□□□ 0.84
CLIP2-201ENST00000223398 POLR2FP61218 127 aaKnown RBP20.29■□□□□ 0.84
CLIP2-201ENST00000223398 LACTBP83111 547 aaPredicted RBP20.29■□□□□ 0.84
CLIP2-201ENST00000223398 RNASELQ05823 741 aaKnown RBP20.29■□□□□ 0.84
CLIP2-201ENST00000223398 DISC1Q9NRI5 854 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 TLR3O15455 904 aaKnown RBP20.29■□□□□ 0.84
CLIP2-201ENST00000223398 LRRC41Q15345 812 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 CERKQ8TCT0 537 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 TNS3Q68CZ2 1445 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 CMA1P23946 247 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 CLUL1Q15846 466 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 CCDC89Q8N998 374 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 TBC1D31Q96DN5 1066 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 ZHX2Q9Y6X8 837 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 CYP19A1P11511 503 aaPredicted RBP20.29■□□□□ 0.84
CLIP2-201ENST00000223398 CDC25AP30304 524 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 WRNIP1Q96S55 665 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 STAM2O75886 525 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 OSTNP61366 133 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 NR5A1Q13285 461 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 NKIRAS1Q9NYS0 192 aa20.29■□□□□ 0.84
CLIP2-201ENST00000223398 HSPA1LP34931 641 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 ARPP19P56211 112 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 ITKQ08881 620 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 FOXP4Q8IVH2 680 aaPredicted RBP20.28■□□□□ 0.84
CLIP2-201ENST00000223398 TRIM50Q86XT4 487 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 LARP4BQ92615 738 aaKnown RBP20.28■□□□□ 0.84
CLIP2-201ENST00000223398 SETD1BQ9UPS6 1966 aaKnown RBP20.28■□□□□ 0.84
CLIP2-201ENST00000223398 IFNB1P01574 187 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 IGKV5-2P06315 115 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 GIMAP7Q8NHV1 300 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 PCIF1Q9H4Z3 704 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 PFDN4Q9NQP4 134 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 KMT5AQ9NQR1 393 aa20.28■□□□□ 0.84
CLIP2-201ENST00000223398 CHRNA5P30532 468 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 PDE6CP51160 858 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 CD209Q9NNX6 404 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 ZBTB33Q86T24 672 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 SYCE1Q8N0S2 351 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 ANKS4BQ8N8V4 417 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 GSDMBQ8TAX9 411 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 TMEM63CQ9P1W3 806 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 TAB3Q8N5C8 712 aaPredicted RBP20.27■□□□□ 0.84
CLIP2-201ENST00000223398 CARMIL3Q8ND23 1372 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 OATP04181 439 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 SEPT10Q9P0V9 454 aa20.27■□□□□ 0.84
CLIP2-201ENST00000223398 SH2B2O14492 632 aaPredicted RBP20.27■□□□□ 0.83
CLIP2-201ENST00000223398 CARD6Q9BX69 1037 aa20.26■□□□□ 0.83
CLIP2-201ENST00000223398 PPP2R5AQ15172 486 aa20.26■□□□□ 0.83
CLIP2-201ENST00000223398 ALDH3A1P30838 453 aa20.26■□□□□ 0.83
CLIP2-201ENST00000223398 RIPOR2Q9Y4F9 1068 aa20.26■□□□□ 0.83
CLIP2-201ENST00000223398 ZSCAN20P17040 1043 aaPredicted RBP20.26■□□□□ 0.83
CLIP2-201ENST00000223398 FAM83BQ5T0W9 1011 aa20.26■□□□□ 0.83
CLIP2-201ENST00000223398 SND1Q7KZF4 910 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLIP2-201ENST00000223398 NUCKS1Q9H1E3 243 aaKnown RBP20.26■□□□□ 0.83
CLIP2-201ENST00000223398 BUB1O43683 1085 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 ASNSP08243 561 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 LONRF2Q1L5Z9 754 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 SPDYE16A6NNV3 312 aaPredicted RBP20.25■□□□□ 0.83
CLIP2-201ENST00000223398 ARHGAP6O43182 974 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 N4BP1O75113 896 aaKnown RBP20.25■□□□□ 0.83
CLIP2-201ENST00000223398 R3HDM1Q15032 1099 aaKnown RBP20.25■□□□□ 0.83
CLIP2-201ENST00000223398 SPDYE2Q495Y8 402 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 SLC27A3Q5K4L6 730 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 CLIC2O15247 247 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 CAPN2P17655 700 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 NSUN7Q8NE18 718 aaKnown RBP20.25■□□□□ 0.83
CLIP2-201ENST00000223398 PI4K2BQ8TCG2 481 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 FAM49AQ9H0Q0 323 aaPredicted RBP20.25■□□□□ 0.83
CLIP2-201ENST00000223398 FANCLQ9NW38 375 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 WDR11Q9BZH6 1224 aa20.25■□□□□ 0.83
CLIP2-201ENST00000223398 FOXP1Q9H334 677 aaPredicted RBP20.25■□□□□ 0.83
CLIP2-201ENST00000223398 GPSM2P81274 684 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 AMFRQ9UKV5 643 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 MAN1A1P33908 653 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 SMYD4Q8IYR2 804 aaPredicted RBP20.24■□□□□ 0.83
CLIP2-201ENST00000223398 OVOS2A0A0G2JMS6 1433 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 OVOS2A0A0J9YW53 1432 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 OVOS2Q6IE36 1432 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 PDXDC2PQ6P474 469 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 TMEM179Q6ZVK1 233 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 FAM160B2Q86V87 743 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 DESI2Q9BSY9 194 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 CPVLQ9H3G5 476 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 RAB20Q9NX57 234 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 IMPACTQ9P2X3 320 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 PNMA3Q9UL41 463 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 MYL3P08590 195 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 VIMP08670 466 aaKnown RBP20.24■□□□□ 0.83
CLIP2-201ENST00000223398 TUBB4BP68371 445 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 NFIXQ14938 502 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 KIAA1841Q6NSI8 718 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 C4orf50Q6ZRC1 276 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 GABPB2Q8TAK5 448 aaPredicted RBP20.24■□□□□ 0.83
CLIP2-201ENST00000223398 RSAD2Q8WXG1 361 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 RNF207Q6ZRF8 634 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 DNAJC5Q9H3Z4 198 aa20.24■□□□□ 0.83
CLIP2-201ENST00000223398 SRGAP2CP0DJJ0 459 aa20.23■□□□□ 0.83
CLIP2-201ENST00000223398 MYL7Q01449 175 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms