RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TRIM43Q96BQ3 446 aaPredicted RBP12.1□□□□□ -0.47
SCN1A-222ENST00000642141 UBA5Q9GZZ9 404 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 ABHD16BQ9H3Z7 469 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 PDGFCQ9NRA1 345 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 CYP39A1Q9NYL5 469 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 ZMYM6O95789 1325 aa12.1□□□□□ -0.47
SCN1A-222ENST00000642141 DUSP11O75319 330 aaKnown RBP12.09□□□□□ -0.47
SCN1A-222ENST00000642141 BEX3Q00994 111 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 ZNF543Q08ER8 600 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 IMMTQ16891 758 aaKnown RBP12.09□□□□□ -0.47
SCN1A-222ENST00000642141 TKFCQ3LXA3 575 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 GNASQ5JWF2 1037 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 TTC22Q5TAA0 569 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 TTC14Q96N46 770 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 RANBP17Q9H2T7 1088 aaKnown RBP12.09□□□□□ -0.47
SCN1A-222ENST00000642141 PDLIM7Q9NR12 457 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 ZSWIM5Q9P217 1185 aa12.09□□□□□ -0.47
SCN1A-222ENST00000642141 PTPDC1A2A3K4 754 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 PCP11498 1178 aaKnown RBP12.08□□□□□ -0.48
SCN1A-222ENST00000642141 ITGB8P26012 769 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 CALML3P27482 149 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 TNFAIP2Q03169 654 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 SNX17Q15036 470 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 USH1GQ495M9 461 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 BTNL9Q6UXG8 535 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.08□□□□□ -0.48
SCN1A-222ENST00000642141 FBXO16Q8IX29 292 aaPredicted RBP12.08□□□□□ -0.48
SCN1A-222ENST00000642141 KLHDC9Q8NEP7 349 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 ZSCAN10Q96SZ4 725 aaPredicted RBP12.08□□□□□ -0.48
SCN1A-222ENST00000642141 DSCC1Q9BVC3 393 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 KATNBL1Q9H079 304 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 KAT14Q9H8E8 782 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 VAT1LQ9HCJ6 419 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 STARD7Q9NQZ5 370 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 CTNNA3Q9UI47 895 aa12.08□□□□□ -0.48
SCN1A-222ENST00000642141 ASB14A6NK59 587 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 DYNC1LI2O43237 492 aaPredicted RBP12.07□□□□□ -0.48
SCN1A-222ENST00000642141 ASGR1P07306 291 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 PTH1RQ03431 593 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 SHHQ15465 462 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 C9orf50Q5SZB4 431 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 CCSAPQ6IQ19 270 aaPredicted RBP12.07□□□□□ -0.48
SCN1A-222ENST00000642141 SLC30A10Q6XR72 485 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 IQCA1Q86XH1 822 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 DEFB123Q8N688 67 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 ENAHQ8N8S7 591 aaPredicted RBP12.07□□□□□ -0.48
SCN1A-222ENST00000642141 PNMA1Q8ND90 353 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 NUP133Q8WUM0 1156 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 CLEC4DQ8WXI8 215 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 TSEN34Q9BSV6 310 aaKnown RBP12.07□□□□□ -0.48
SCN1A-222ENST00000642141 SPC25Q9HBM1 224 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 TMEM39AQ9NV64 488 aa12.07□□□□□ -0.48
SCN1A-222ENST00000642141 DHX16O60231 1041 aaKnown RBP12.06□□□□□ -0.48
SCN1A-222ENST00000642141 CLTBP09497 229 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 SNHG28P0DPA3 235 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 SMPD1P17405 629 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 CHMLP26374 656 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 GJA9P57773 515 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 LRIT3Q3SXY7 679 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 TAPT1Q6NXT6 567 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 KIAA1211Q6ZU35 1233 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 CYB5R4Q7L1T6 521 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 SKAP1Q86WV1 359 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 DGKHQ86XP1 1220 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 GLT1D1Q96MS3 346 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 FAM161BQ96MY7 647 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 UBAC1Q9BSL1 405 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 AP5M1Q9H0R1 490 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 TAF6LQ9Y6J9 622 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 MCM3APO60318 1980 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 TNKSO95271 1327 aa12.06□□□□□ -0.48
SCN1A-222ENST00000642141 DCDC2CA8MYV0 355 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 CTAGE5O15320 804 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 RAG1P15918 1043 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 EPHB4P54760 987 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 FAAP100Q0VG06 881 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 C1orf53Q5VUE5 145 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 CXCL17Q6UXB2 119 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 RNF207Q6ZRF8 634 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 CHST3Q7LGC8 479 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 TLK2Q86UE8 772 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 ADGRF4Q8IZF3 695 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 TBC1D5Q92609 795 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 KRT23Q9C075 422 aa12.05□□□□□ -0.48
SCN1A-222ENST00000642141 UPF3AQ9H1J1 476 aaKnown RBP12.05□□□□□ -0.48
SCN1A-222ENST00000642141 MOXD2PA6NHM9 499 aa12.04□□□□□ -0.48
SCN1A-222ENST00000642141 PARP1P09874 1014 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 ALDH5A1P51649 535 aaPredicted RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 PSMC6P62333 389 aa12.04□□□□□ -0.48
SCN1A-222ENST00000642141 RPS6P62753 249 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 FSCN1Q16658 493 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 GPATCH4Q5T3I0 446 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 IFIT1BQ5T764 474 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 IQSEC1Q6DN90 963 aa12.04□□□□□ -0.48
SCN1A-222ENST00000642141 STAG2Q8N3U4 1231 aa12.04□□□□□ -0.48
SCN1A-222ENST00000642141 PCSK9Q8NBP7 692 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 PPP1R13LQ8WUF5 828 aa12.04□□□□□ -0.48
SCN1A-222ENST00000642141 CNNM2Q9H8M5 875 aa12.04□□□□□ -0.48
SCN1A-222ENST00000642141 GNEQ9Y223 722 aaKnown RBP12.04□□□□□ -0.48
SCN1A-222ENST00000642141 COL6A3P12111 3177 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 155.8 ms