RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 CYP39A1Q9NYL5 469 aa16.4■□□□□ 0.22
LINC00339-211ENST00000641009 ICAM1P05362 532 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 PDHBP11177 359 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 PCP11498 1178 aaKnown RBP16.39■□□□□ 0.21
LINC00339-211ENST00000641009 BTNL9Q6UXG8 535 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 DEFB123Q8N688 67 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 NUP133Q8WUM0 1156 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 ZKSCAN3Q9BRR0 538 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 STARD7Q9NQZ5 370 aa16.39■□□□□ 0.21
LINC00339-211ENST00000641009 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.38■□□□□ 0.21
LINC00339-211ENST00000641009 MOXD2PA6NHM9 499 aa16.38■□□□□ 0.21
LINC00339-211ENST00000641009 ZNF213O14771 459 aa16.38■□□□□ 0.21
LINC00339-211ENST00000641009 CLTBP09497 229 aa16.38■□□□□ 0.21
LINC00339-211ENST00000641009 ITGB8P26012 769 aa16.38■□□□□ 0.21
LINC00339-211ENST00000641009 NSMFQ6X4W1 530 aa16.38■□□□□ 0.21
LINC00339-211ENST00000641009 PURBQ96QR8 312 aaKnown RBP16.38■□□□□ 0.21
LINC00339-211ENST00000641009 UPF3AQ9H1J1 476 aaKnown RBP16.38■□□□□ 0.21
LINC00339-211ENST00000641009 RNF41Q9H4P4 317 aaPredicted RBP16.38■□□□□ 0.21
LINC00339-211ENST00000641009 ASB14A6NK59 587 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 ASGR1P07306 291 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 CST5P28325 142 aaPredicted RBP16.37■□□□□ 0.21
LINC00339-211ENST00000641009 GJA9P57773 515 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 ZNF543Q08ER8 600 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 SHHQ15465 462 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 C9orf50Q5SZB4 431 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 ESR2Q92731 530 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 TTC14Q96N46 770 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 SPC25Q9HBM1 224 aa16.37■□□□□ 0.21
LINC00339-211ENST00000641009 HIP1O00291 1037 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 NFIBO00712 420 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 PTGS1P23219 599 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 TNFAIP2Q03169 654 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 GNASQ5JWF2 1037 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 NOL8Q76FK4 1167 aaKnown RBP16.36■□□□□ 0.21
LINC00339-211ENST00000641009 EEPD1Q7L9B9 569 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 PCSK9Q8NBP7 692 aaKnown RBP16.36■□□□□ 0.21
LINC00339-211ENST00000641009 GLT1D1Q96MS3 346 aa16.36■□□□□ 0.21
LINC00339-211ENST00000641009 B4E1Z4 1266 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 CTAGE5O15320 804 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 SNHG28P0DPA3 235 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 PDE4AP27815 886 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 IRX6P78412 446 aaPredicted RBP16.35■□□□□ 0.21
LINC00339-211ENST00000641009 BEX3Q00994 111 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 FAAP100Q0VG06 881 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 BAATQ14032 418 aaPredicted RBP16.35■□□□□ 0.21
LINC00339-211ENST00000641009 ANKRD33Q7Z3H0 272 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 FBXO16Q8IX29 292 aaPredicted RBP16.35■□□□□ 0.21
LINC00339-211ENST00000641009 IL25Q9H293 177 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 PDGFCQ9NRA1 345 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 TMEM39AQ9NV64 488 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 PRUNE2Q8WUY3 3088 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 KIAA0355O15063 1070 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 KDM4AO75164 1064 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 GOLGA8HP0CJ92 632 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 VTI1AQ96AJ9 217 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 TOX2Q96NM4 488 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 DSCC1Q9BVC3 393 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 CPVLQ9H3G5 476 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 MTMR10Q9NXD2 777 aa16.35■□□□□ 0.21
LINC00339-211ENST00000641009 GNEQ9Y223 722 aaKnown RBP16.35■□□□□ 0.21
LINC00339-211ENST00000641009 ELP1O95163 1332 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 KIAA1217Q5T5P2 1943 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 PTPDC1A2A3K4 754 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 DCDC2CA8MYV0 355 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 GSPT1P15170 499 aaKnown RBP16.34■□□□□ 0.21
LINC00339-211ENST00000641009 RAG1P15918 1043 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 SMPD1P17405 629 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 TMEM63BQ5T3F8 832 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 TAPT1Q6NXT6 567 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 SLC30A10Q6XR72 485 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 TLK2Q86UE8 772 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 IQCA1Q86XH1 822 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 DGKHQ86XP1 1220 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 CLEC4DQ8WXI8 215 aa16.34■□□□□ 0.21
LINC00339-211ENST00000641009 CDK7P50613 346 aa16.33■□□□□ 0.2
LINC00339-211ENST00000641009 ALDH5A1P51649 535 aaPredicted RBP16.33■□□□□ 0.2
LINC00339-211ENST00000641009 EPHB4P54760 987 aa16.33■□□□□ 0.2
LINC00339-211ENST00000641009 NKX3-2P78367 333 aa16.33■□□□□ 0.2
LINC00339-211ENST00000641009 IMMTQ16891 758 aaKnown RBP16.33■□□□□ 0.2
LINC00339-211ENST00000641009 PNMA1Q8ND90 353 aa16.33■□□□□ 0.2
LINC00339-211ENST00000641009 UBA5Q9GZZ9 404 aa16.33■□□□□ 0.2
LINC00339-211ENST00000641009 ZSWIM5Q9P217 1185 aa16.33■□□□□ 0.2
LINC00339-211ENST00000641009 BAZ2BQ9UIF8 2168 aaKnown RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 A0A0U1RQG5 324 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 DYNC1LI2O43237 492 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 CALML3P27482 149 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 FSCN1Q16658 493 aaKnown RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 GPATCH4Q5T3I0 446 aaKnown RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 TTC22Q5TAA0 569 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 CXCL17Q6UXB2 119 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 ENAHQ8N8S7 591 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 MORC4Q8TE76 937 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 ZSCAN10Q96SZ4 725 aaPredicted RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 AP5M1Q9H0R1 490 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 KAT14Q9H8E8 782 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 VTA1Q9NP79 307 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 ADD3Q9UEY8 706 aaKnown RBP16.32■□□□□ 0.2
LINC00339-211ENST00000641009 MROH7Q68CQ1 1323 aa16.32■□□□□ 0.2
LINC00339-211ENST00000641009 ARVCFO00192 962 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 TNKSO95271 1327 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms