RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PSTPIP2Q9H939 334 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 VAT1LQ9HCJ6 419 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 HOOK1Q9UJC3 728 aaKnown RBP12.04□□□□□ -0.48
CLN3-248ENST00000636355 ABCB11O95342 1321 aa12.04□□□□□ -0.48
CLN3-248ENST00000636355 COL11A1P12107 1806 aaPredicted RBP12.04□□□□□ -0.48
CLN3-248ENST00000636355 NEMFO60524 1076 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 VCAM1P19320 739 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 MARCKSP29966 332 aaPredicted RBP12.03□□□□□ -0.48
CLN3-248ENST00000636355 INPP5BP32019 993 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 SYKP43405 635 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 IREB2P48200 963 aaKnown RBP12.03□□□□□ -0.48
CLN3-248ENST00000636355 GHRHRQ02643 423 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 PTGDRQ13258 359 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 PPP4R3AQ6IN85 833 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 KANK3Q6NY19 840 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 SHC4Q6S5L8 630 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 KRT26Q7Z3Y9 468 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 SPICE1Q8N0Z3 855 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 PRPF38AQ8NAV1 312 aaKnown RBP12.03□□□□□ -0.48
CLN3-248ENST00000636355 COA7Q96BR5 231 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 NUP88Q99567 741 aaPredicted RBP12.03□□□□□ -0.48
CLN3-248ENST00000636355 SLF1Q9BQI6 1058 aa12.03□□□□□ -0.48
CLN3-248ENST00000636355 MAP3K20Q9NYL2 800 aaKnown RBP12.03□□□□□ -0.48
CLN3-248ENST00000636355 SLC26A4O43511 780 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 ICAM1P05362 532 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 TXLNAP40222 546 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 NDUFA8P51970 172 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 OAZ1P54368 228 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 MTMR2Q13614 643 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 INF2Q27J81 1249 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 SH3D19Q5HYK7 790 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 KIAA1755Q5JYT7 1200 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 RASGRP4Q8TDF6 673 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 TBCKQ8TEA7 893 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 ZNF526Q8TF50 670 aaPredicted RBP12.02□□□□□ -0.49
CLN3-248ENST00000636355 FUCA2Q9BTY2 467 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 TAF1DQ9H5J8 278 aaPredicted RBP12.02□□□□□ -0.49
CLN3-248ENST00000636355 EHMT1Q9H9B1 1298 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 GRPEL1Q9HAV7 217 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 KCNH3Q9ULD8 1083 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 MRPL11Q9Y3B7 192 aaKnown RBP12.02□□□□□ -0.49
CLN3-248ENST00000636355 RABGAP1Q9Y3P9 1069 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 CSADQ9Y600 493 aa12.02□□□□□ -0.49
CLN3-248ENST00000636355 LOXHD1Q8IVV2 1947 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 A0A1B0GVL5 298 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 ZNF202O95125 648 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 OR52Z1P0C646 297 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 MCM7P33993 719 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 SREBF1P36956 1147 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 USP11P51784 963 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 MAP3K9P80192 1104 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 GLIS2Q9BZE0 524 aaPredicted RBP12.01□□□□□ -0.49
CLN3-248ENST00000636355 RAB34Q9BZG1 259 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 MAGEF1Q9HAY2 307 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 PPP1R9AQ9ULJ8 1098 aa12.01□□□□□ -0.49
CLN3-248ENST00000636355 SPDYE3A6NKU9 549 aa12□□□□□ -0.49
CLN3-248ENST00000636355 SEMA3FQ13275 785 aa12□□□□□ -0.49
CLN3-248ENST00000636355 VGLL4Q14135 290 aa12□□□□□ -0.49
CLN3-248ENST00000636355 ZNF174Q15697 407 aa12□□□□□ -0.49
CLN3-248ENST00000636355 NOM1Q5C9Z4 860 aaKnown RBP12□□□□□ -0.49
CLN3-248ENST00000636355 ANKRD13AQ8IZ07 590 aa12□□□□□ -0.49
CLN3-248ENST00000636355 C4orf32Q8N8J7 132 aa12□□□□□ -0.49
CLN3-248ENST00000636355 PROCA1Q8NCQ7 364 aaPredicted RBP12□□□□□ -0.49
CLN3-248ENST00000636355 CRYGNQ8WXF5 182 aa12□□□□□ -0.49
CLN3-248ENST00000636355 MBOAT7Q96N66 472 aa12□□□□□ -0.49
CLN3-248ENST00000636355 ANO3Q9BYT9 981 aa12□□□□□ -0.49
CLN3-248ENST00000636355 TANGO6Q9C0B7 1094 aa12□□□□□ -0.49
CLN3-248ENST00000636355 CSRNP2Q9H175 543 aa12□□□□□ -0.49
CLN3-248ENST00000636355 SLC38A10Q9HBR0 1119 aa12□□□□□ -0.49
CLN3-248ENST00000636355 TMOD4Q9NZQ9 345 aa12□□□□□ -0.49
CLN3-248ENST00000636355 SNCAIPQ9Y6H5 919 aa12□□□□□ -0.49
CLN3-248ENST00000636355 TRPM7Q96QT4 1865 aa12□□□□□ -0.49
CLN3-248ENST00000636355 CYP3A7-CYP3A51PA0A087WV96 503 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 ADM5C9JUS6 153 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 WNT7AO00755 349 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 MEIS2O14770 477 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 ATP2A1O14983 1001 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 TBX3O15119 743 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 CCNT1O60563 726 aaKnown RBP11.99□□□□□ -0.49
CLN3-248ENST00000636355 USP2O75604 605 aaPredicted RBP11.99□□□□□ -0.49
CLN3-248ENST00000636355 MYL1P05976 194 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 ATP2B1P20020 1258 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 CYP3A7P24462 503 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 DEKP35659 375 aaKnown RBP11.99□□□□□ -0.49
CLN3-248ENST00000636355 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
CLN3-248ENST00000636355 FKBP1BP68106 108 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 PPATQ06203 517 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 TYRO3Q06418 890 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 SPP2Q13103 211 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 ZYXQ15942 572 aaKnown RBP11.99□□□□□ -0.49
CLN3-248ENST00000636355 STX1AQ16623 288 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 TMEM266Q2M3C6 531 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 LETM2Q2VYF4 491 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 JAKMIP3Q5VZ66 844 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 SASS6Q6UVJ0 657 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 DTHD1Q6ZMT9 781 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 KRBA2Q6ZNG9 492 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 GAS2L3Q86XJ1 694 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 MCF2L2Q86YR7 1114 aa11.99□□□□□ -0.49
CLN3-248ENST00000636355 ZKSCAN4Q969J2 545 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms