RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TKFCQ3LXA3 575 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 NSMFQ6X4W1 530 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 PPP1R12CQ9BZL4 782 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 GPCPD1Q9NPB8 672 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 HELLSQ9NRZ9 838 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 CYP39A1Q9NYL5 469 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 CCPG1Q9ULG6 757 aa19.1■□□□□ 0.65
CLN3-246ENST00000636228 FRMPD2Q68DX3 1309 aaPredicted RBP19.09■□□□□ 0.65
CLN3-246ENST00000636228 A0A0U1RQG5 324 aaPredicted RBP19.09■□□□□ 0.65
CLN3-246ENST00000636228 ASB14A6NK59 587 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 DYNC1LI2O43237 492 aaPredicted RBP19.09■□□□□ 0.65
CLN3-246ENST00000636228 ORC4O43929 436 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 SMPD1P17405 629 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 HAND2P61296 217 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 ALX1Q15699 326 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 PPP4R3BQ5MIZ7 849 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 CXCL17Q6UXB2 119 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 C16orf59Q7L2K0 433 aa19.09■□□□□ 0.65
CLN3-246ENST00000636228 FBXO16Q8IX29 292 aaPredicted RBP19.09■□□□□ 0.65
CLN3-246ENST00000636228 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.09■□□□□ 0.653e-6■□□□□ 10.1
CLN3-246ENST00000636228 FGRP09769 529 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 ACRP10323 421 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 CSF2RAP15509 400 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 NOVP48745 357 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 NMIQ13287 307 aaPredicted RBP19.08■□□□□ 0.64
CLN3-246ENST00000636228 MCMDC2Q4G0Z9 681 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 MFSD5Q6N075 450 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 ZNF589Q86UQ0 364 aaPredicted RBP19.08■□□□□ 0.64
CLN3-246ENST00000636228 FAM126BQ8IXS8 530 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 DCAF4Q8WV16 495 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 TMEM47Q9BQJ4 181 aa19.08■□□□□ 0.64
CLN3-246ENST00000636228 COL25A1Q9BXS0 654 aaPredicted RBP19.08■□□□□ 0.64
CLN3-246ENST00000636228 GNEQ9Y223 722 aaKnown RBP19.08■□□□□ 0.64
CLN3-246ENST00000636228 MROH7Q68CQ1 1323 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 ICAM1P05362 532 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 HSPD1P10809 573 aaKnown RBP19.07■□□□□ 0.64
CLN3-246ENST00000636228 CYP2C18P33260 490 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 HDAC1Q13547 482 aaPredicted RBP19.07■□□□□ 0.64
CLN3-246ENST00000636228 TAPT1Q6NXT6 567 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 TLK2Q86UE8 772 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 MAFAQ8NHW3 353 aaPredicted RBP19.07■□□□□ 0.64
CLN3-246ENST00000636228 LNPKQ9C0E8 428 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 AP5M1Q9H0R1 490 aa19.07■□□□□ 0.64
CLN3-246ENST00000636228 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.06■□□□□ 0.64
CLN3-246ENST00000636228 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.06■□□□□ 0.64
CLN3-246ENST00000636228 TRIM6-TRIM34B2RNG4 842 aa19.06■□□□□ 0.64
CLN3-246ENST00000636228 NKX3-2P78367 333 aa19.06■□□□□ 0.64
CLN3-246ENST00000636228 BAATQ14032 418 aaPredicted RBP19.06■□□□□ 0.64
CLN3-246ENST00000636228 TMEM240Q5SV17 173 aa19.06■□□□□ 0.64
CLN3-246ENST00000636228 B4GALNT3Q6L9W6 998 aa19.06■□□□□ 0.64
CLN3-246ENST00000636228 RILPL2Q969X0 211 aa19.06■□□□□ 0.64
CLN3-246ENST00000636228 RANBP17Q9H2T7 1088 aaKnown RBP19.06■□□□□ 0.64
CLN3-246ENST00000636228 GRIN2DO15399 1336 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 GRXCR1A8MXD5 290 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 NFIBO00712 420 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 TLR3O15455 904 aaKnown RBP19.05■□□□□ 0.64
CLN3-246ENST00000636228 CD4P01730 458 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 TOP1P11387 765 aaKnown RBP19.05■□□□□ 0.64
CLN3-246ENST00000636228 FOSL2P15408 326 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 PSMC6P62333 389 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 GRIN2CQ14957 1233 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 FSCN1Q16658 493 aaKnown RBP19.05■□□□□ 0.64
CLN3-246ENST00000636228 SYDE2Q5VT97 1194 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 IQSEC1Q6DN90 963 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 KIAA1211Q6ZU35 1233 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 ZNF365Q70YC5 407 aa19.05■□□□□ 0.64
CLN3-246ENST00000636228 UMODL1Q5DID0 1318 aa19.04■□□□□ 0.64
CLN3-246ENST00000636228 DNAJB2P25686 324 aa19.04■□□□□ 0.64
CLN3-246ENST00000636228 PPIGQ13427 754 aaKnown RBP eCLIP19.04■□□□□ 0.646e-7■■□□□ 11.8
CLN3-246ENST00000636228 ITGA7Q13683 1181 aa19.04■□□□□ 0.64
CLN3-246ENST00000636228 BTNL9Q6UXG8 535 aa19.04■□□□□ 0.64
CLN3-246ENST00000636228 TMEM199Q8N511 208 aa19.04■□□□□ 0.64
CLN3-246ENST00000636228 TRPV6Q9H1D0 765 aa19.04■□□□□ 0.64
CLN3-246ENST00000636228 PTPDC1A2A3K4 754 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 PBX2P40425 430 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 TBC1D10CQ8IV04 446 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 SLC43A3Q8NBI5 491 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 ZKSCAN3Q9BRR0 538 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 TCP11L1Q9NUJ3 509 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 UNC80Q8N2C7 3258 aa19.03■□□□□ 0.64
CLN3-246ENST00000636228 PDHBP11177 359 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 CALML3P27482 149 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 ALDH5A1P51649 535 aaPredicted RBP19.02■□□□□ 0.64
CLN3-246ENST00000636228 CCL23P55773 120 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 SLC30A10Q6XR72 485 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 MFSD6Q6ZSS7 791 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 TIFAQ96CG3 184 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 VTA1Q9NP79 307 aa19.02■□□□□ 0.64
CLN3-246ENST00000636228 CCDC171Q6TFL3 1326 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 MCM3APO60318 1980 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 B4GALT4O60513 344 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 CABYRO75952 493 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 AKNAD1Q5T1N1 836 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 MORC4Q8TE76 937 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 PPP1R13LQ8WUF5 828 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 CLEC4DQ8WXI8 215 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 YTHDC1Q96MU7 727 aaKnown RBP19.01■□□□□ 0.63
CLN3-246ENST00000636228 PBX4Q9BYU1 374 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 WDR11Q9BZH6 1224 aa19.01■□□□□ 0.63
CLN3-246ENST00000636228 CPVLQ9H3G5 476 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms