RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 GNASQ5JWF2 1037 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 TTC14Q96N46 770 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 TOMM22Q9NS69 142 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 CYP39A1Q9NYL5 469 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 CCPG1Q9ULG6 757 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 TMEM265A0A087WTH1 108 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 MYADML2A6NDP7 307 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 SOWAHBA6NEL2 793 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 TRIM6-TRIM34B2RNG4 842 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 CABYRO75952 493 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 ITGB8P26012 769 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 TNFAIP2Q03169 654 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 CCDC96Q2M329 555 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 CCDC174Q6PII3 467 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 OSBPL3Q9H4L5 887 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 RNF41Q9H4P4 317 aaPredicted RBP21.72■■□□□ 1.07
CLN3-241ENST00000635861 TBX21Q9UL17 535 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 Q9Y3F1 56 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 ARVCFO00192 962 aa21.71■■□□□ 1.07
CLN3-241ENST00000635861 TIMP1P01033 207 aa21.71■■□□□ 1.07
CLN3-241ENST00000635861 NMIQ13287 307 aaPredicted RBP21.71■■□□□ 1.07
CLN3-241ENST00000635861 MORC4Q8TE76 937 aa21.71■■□□□ 1.07
CLN3-241ENST00000635861 GUCD1Q96NT3 240 aa21.71■■□□□ 1.07
CLN3-241ENST00000635861 TMEM47Q9BQJ4 181 aa21.71■■□□□ 1.07
CLN3-241ENST00000635861 LNPKQ9C0E8 428 aa21.71■■□□□ 1.07
CLN3-241ENST00000635861 ADD3Q9UEY8 706 aaKnown RBP21.71■■□□□ 1.07
CLN3-241ENST00000635861 TLR3O15455 904 aaKnown RBP21.7■■□□□ 1.06
CLN3-241ENST00000635861 RRP12Q5JTH9 1297 aaKnown RBP21.7■■□□□ 1.06
CLN3-241ENST00000635861 AKNAD1Q5T1N1 836 aa21.7■■□□□ 1.06
CLN3-241ENST00000635861 SYDE2Q5VT97 1194 aa21.7■■□□□ 1.06
CLN3-241ENST00000635861 IQSEC1Q6DN90 963 aa21.7■■□□□ 1.06
CLN3-241ENST00000635861 MFSD6Q6ZSS7 791 aa21.7■■□□□ 1.06
CLN3-241ENST00000635861 ZNF589Q86UQ0 364 aaPredicted RBP21.7■■□□□ 1.06
CLN3-241ENST00000635861 RNPC3Q96LT9 517 aaKnown RBP21.7■■□□□ 1.06
CLN3-241ENST00000635861 VTA1Q9NP79 307 aa21.7■■□□□ 1.06
CLN3-241ENST00000635861 GNEQ9Y223 722 aaKnown RBP21.7■■□□□ 1.06
CLN3-241ENST00000635861 CTAGE5O15320 804 aa21.69■■□□□ 1.06
CLN3-241ENST00000635861 ZEB2O60315 1214 aa21.69■■□□□ 1.06
CLN3-241ENST00000635861 MUM1L1Q5H9M0 696 aa21.69■■□□□ 1.06
CLN3-241ENST00000635861 MFSD5Q6N075 450 aa21.69■■□□□ 1.06
CLN3-241ENST00000635861 VTI1AQ96AJ9 217 aa21.69■■□□□ 1.06
CLN3-241ENST00000635861 NSMFQ6X4W1 530 aa21.68■■□□□ 1.06
CLN3-241ENST00000635861 TLK2Q86UE8 772 aa21.68■■□□□ 1.06
CLN3-241ENST00000635861 RILPL2Q969X0 211 aa21.68■■□□□ 1.06
CLN3-241ENST00000635861 AP5M1Q9H0R1 490 aa21.68■■□□□ 1.06
CLN3-241ENST00000635861 MTMR7Q9Y216 660 aa21.68■■□□□ 1.06
CLN3-241ENST00000635861 ASTN1O14525 1302 aa21.68■■□□□ 1.06
CLN3-241ENST00000635861 WDR19Q8NEZ3 1342 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 HIP1O00291 1037 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 DLL1O00548 723 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 SNHG28P0DPA3 235 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 PDHBP11177 359 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 SDSP20132 328 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 PPIGQ13427 754 aaKnown RBP eCLIP21.67■■□□□ 1.066e-7■■□□□ 11.8
CLN3-241ENST00000635861 CCDC178Q5BJE1 867 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 NOL8Q76FK4 1167 aaKnown RBP21.67■■□□□ 1.06
CLN3-241ENST00000635861 RASGRP2Q7LDG7 609 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 CHD1LQ86WJ1 897 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 FAM126BQ8IXS8 530 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 ESR2Q92731 530 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 CHMP4CQ96CF2 233 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 MAF1Q9H063 256 aa21.67■■□□□ 1.06
CLN3-241ENST00000635861 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.66■■□□□ 1.06
CLN3-241ENST00000635861 SNAP25P60880 206 aa21.66■■□□□ 1.06
CLN3-241ENST00000635861 FSCN1Q16658 493 aaKnown RBP21.66■■□□□ 1.06
CLN3-241ENST00000635861 TAPT1Q6NXT6 567 aa21.66■■□□□ 1.06
CLN3-241ENST00000635861 SLC43A3Q8NBI5 491 aa21.66■■□□□ 1.06
CLN3-241ENST00000635861 MPHOSPH6Q99547 160 aaKnown RBP21.66■■□□□ 1.06
CLN3-241ENST00000635861 SEMA6BQ9H3T3 888 aa21.66■■□□□ 1.06
CLN3-241ENST00000635861 CDH23Q9H251 3354 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 SLC16A2P36021 539 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 EPHB4P54760 987 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 IRX5P78411 483 aaPredicted RBP21.65■■□□□ 1.06
CLN3-241ENST00000635861 NUCB1Q02818 461 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 ZNF543Q08ER8 600 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 GPATCH4Q5T3I0 446 aaKnown RBP21.65■■□□□ 1.06
CLN3-241ENST00000635861 TTBK2Q6IQ55 1244 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 DGKHQ86XP1 1220 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 TMEM199Q8N511 208 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 EYSQ5T1H1 3165 aa21.65■■□□□ 1.06
CLN3-241ENST00000635861 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.64■■□□□ 1.06
CLN3-241ENST00000635861 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.64■■□□□ 1.06
CLN3-241ENST00000635861 ZNF213O14771 459 aa21.64■■□□□ 1.06
CLN3-241ENST00000635861 CD4P01730 458 aa21.64■■□□□ 1.06
CLN3-241ENST00000635861 SMPD1P17405 629 aa21.64■■□□□ 1.06
CLN3-241ENST00000635861 ALDH5A1P51649 535 aaPredicted RBP21.64■■□□□ 1.06
CLN3-241ENST00000635861 HAND2P61296 217 aa21.64■■□□□ 1.06
CLN3-241ENST00000635861 BAATQ14032 418 aaPredicted RBP21.64■■□□□ 1.06
CLN3-241ENST00000635861 PLEKHM2Q8IWE5 1019 aa21.64■■□□□ 1.06
CLN3-241ENST00000635861 FAM161BQ96MY7 647 aa21.64■■□□□ 1.06
CLN3-241ENST00000635861 KIAA1217Q5T5P2 1943 aa21.64■■□□□ 1.05
CLN3-241ENST00000635861 FRMPD2Q68DX3 1309 aaPredicted RBP21.64■■□□□ 1.05
CLN3-241ENST00000635861 BEX3Q00994 111 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 DUSP28Q4G0W2 176 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 FBXO16Q8IX29 292 aaPredicted RBP21.63■■□□□ 1.05
CLN3-241ENST00000635861 CDX2Q99626 313 aaPredicted RBP21.63■■□□□ 1.05
CLN3-241ENST00000635861 GPCPD1Q9NPB8 672 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 SCN10AQ9Y5Y9 1956 aa21.63■■□□□ 1.05
CLN3-241ENST00000635861 DYNC1LI2O43237 492 aaPredicted RBP21.63■■□□□ 1.05
CLN3-241ENST00000635861 ITGA7Q13683 1181 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms