RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	MRM1	Q6IN84	353 aa	Known RBP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	OGFOD2	Q6N063	350 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	CELF2-AS1	Q8N7Q2	184 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	NAT16	Q8N8M0	369 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	ADCY4	Q8NFM4	1077 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	HNRNPLL	Q8WVV9	542 aa	Known RBP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	INTS4	Q96HW7	963 aa	Known RBP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	MMP19	Q99542	508 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	MCMBP	Q9BTE3	642 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	TRIM55	Q9BYV6	548 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	ZNF552	Q9H707	407 aa	Predicted RBP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	GPR160	Q9UJ42	338 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	TAF6L	Q9Y6J9	622 aa		4.78	□□□□□ -1.64
CNOT1-223	ENST00000628857	LRRC10B	A6NIK2	292 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	VAMP4	O75379	141 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	IFNGR1	P15260	489 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	PAM	P19021	973 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	L1CAM	P32004	1257 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	TRHR	P34981	398 aa	Predicted RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	YBX1	P67809	324 aa	Known RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	TMEM62	Q0P6H9	643 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	RASGRF1	Q13972	1273 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	CBX2	Q14781	532 aa	Predicted RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	SV2C	Q496J9	727 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	E4F1	Q66K89	784 aa	Predicted RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	GTF2IRD2B	Q6EKJ0	949 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	MPZL3	Q6UWV2	235 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	GTF2IRD2	Q86UP8	949 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	KSR1	Q8IVT5	923 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	FBXO15	Q8NCQ5	510 aa	Predicted RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	SREK1	Q8WXA9	508 aa	Known RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	LIN37	Q96GY3	246 aa	Predicted RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	SLC26A8	Q96RN1	970 aa		4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	GPR55	Q9Y2T6	319 aa	Predicted RBP	4.77	□□□□□ -1.65
CNOT1-223	ENST00000628857	OR14I1	A6ND48	311 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	KCNH1	O95259	989 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	ITGAV	P06756	1048 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	CYP4F8	P98187	520 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	SERINC3	Q13530	473 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	NR1I3	Q14994	352 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	SLC10A6	Q3KNW5	377 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	OLFML2B	Q68BL8	750 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	ZNF227	Q86WZ6	799 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	JAML	Q86YT9	394 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	JMJD8	Q96S16	334 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	PPP1R16B	Q96T49	567 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	PLCD4	Q9BRC7	762 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	PDLIM7	Q9NR12	457 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857	LRP2BP	Q9P2M1	347 aa		4.76	□□□□□ -1.65
CNOT1-223	ENST00000628857		B2RBV5	119 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	PDPK1	O15530	556 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	SRGAP3	O43295	1099 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	SEMA7A	O75326	666 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	MPO	P05164	745 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	PRKCA	P17252	672 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	GTF2F1	P35269	517 aa	Known RBP eCLIP	4.75	□□□□□ -1.65	1e-7	■■■■□ 19.3
CNOT1-223	ENST00000628857	GTF2A2	P52657	109 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	MVK	Q03426	396 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	MLANA	Q16655	118 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	LONRF2	Q1L5Z9	754 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	PRR23B	Q6ZRT6	265 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	LRRC47	Q8N1G4	583 aa	Known RBP	4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	EPB41L4B	Q9H329	900 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	TNFRSF12A	Q9NP84	129 aa		4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	DCP1A	Q9NPI6	582 aa	Predicted RBP	4.75	□□□□□ -1.65
CNOT1-223	ENST00000628857	NPHP3-ACAD11	A0A0J9YXS1	232 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	TEX51	A0A1B0GUA7	166 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857		A0A1W2PQU0	124 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	STXBP3	O00186	592 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	EFEMP2	O95967	443 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	MED14OS	P0DP75	135 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	FGFR1	P11362	822 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	GLDC	P23378	1020 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	CYP4F3	Q08477	520 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	SCRN1	Q12765	414 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	MAP4K2	Q12851	820 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	DPY19L1	Q2PZI1	675 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	ZC3H12B	Q5HYM0	836 aa	Known RBP	4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	KREMEN2	Q8NCW0	462 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	NUP43	Q8NFH3	380 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	NPLOC4	Q8TAT6	608 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	FRS2	Q8WU20	508 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	DRC1	Q96MC2	740 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	SLC38A3	Q99624	504 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	GOLGA2P5	Q9HBQ8	144 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	ST7	Q9NRC1	585 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	4.74	□□□□□ -1.65	2e-7	■□□□□ 9.8
CNOT1-223	ENST00000628857	IMPACT	Q9P2X3	320 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	PPP1R1B	Q9UD71	204 aa	Predicted RBP	4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857	NPFFR2	Q9Y5X5	522 aa		4.74	□□□□□ -1.65
CNOT1-223	ENST00000628857		A0A1W2PQ27	194 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857		A0A1W2PQ64	194 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857		A0A1W2PQC6	194 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857		A0A1W2PQD8	194 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	NPHS1	O60500	1241 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	TSPAN15	O95858	294 aa		4.73	□□□□□ -1.65
CNOT1-223	ENST00000628857	CYBB	P04839	570 aa		4.73	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms