RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 POTEDQ86YR6 584 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 CEP112Q8N8E3 955 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 C6orf50Q9HD87 102 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 GPCPD1Q9NPB8 672 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 IDEP14735 1019 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 ARHGAP25P42331 645 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 CYP27A1Q02318 531 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 ANKZF1Q9H8Y5 726 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 CD209Q9NNX6 404 aa14.49□□□□□ -0.09
CCDC88A-214ENST00000621814 CTAGE15A4D2H0 777 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 CTAGE8P0CG41 777 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 ST5P78524 1137 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 CTAGE6Q86UF2 777 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 CTAGE4Q8IX94 777 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 RTFDC1Q9BY42 306 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 LEMD3Q9Y2U8 911 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 NEK8Q86SG6 692 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 NEK11Q8NG66 645 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 NOC4LQ9BVI4 516 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 KBTBD4Q9NVX7 518 aa14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 REXO2Q9Y3B8 237 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-214ENST00000621814 MACROD2A1Z1Q3 448 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 LGALS16A8MUM7 142 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 SLURP2P0DP57 97 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 NOA1Q8NC60 698 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 GIMAP8Q8ND71 665 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 CCDC47Q96A33 483 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 CNOT6LQ96LI5 555 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 TRERF1Q96PN7 1200 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 ZNF287Q9HBT7 754 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 DUSP10Q9Y6W6 482 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 CDK5RAP3Q96JB5 506 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 GDAP1L1Q96MZ0 367 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 FUT8Q9BYC5 575 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 TRIM9Q9C026 710 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 MYO6Q9UM54 1294 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 FLT1P17948 1338 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 PDS5AQ29RF7 1337 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 MARCH6O60337 910 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 PHACTR2O75167 634 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 RHOBTB3O94955 611 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 GNA11P29992 359 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 TRIM14Q14142 442 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 REXO1Q8N1G1 1221 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 DRC1Q96MC2 740 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 ZMYND12Q9H0C1 365 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 ABCB6Q9NP58 842 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 A0A1B0GUL6 1792 aa14.47□□□□□ -0.09
CCDC88A-214ENST00000621814 POTEMA6NI47 508 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 GTF2IP78347 998 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 RC3H1Q5TC82 1133 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 TTI2Q6NXR4 508 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 KRT25Q7Z3Z0 450 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 P2RX5Q93086 422 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 CALML4Q96GE6 196 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 DUSP9Q99956 384 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 CCSER1Q9C0I3 900 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 ZNHIT6Q9NWK9 470 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 GGA1Q9UJY5 639 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 ZMYND10O75800 440 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 TDP2O95551 362 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 SSBP05455 408 aaKnown RBP eCLIP14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 TNNI2P48788 182 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 LRRC41Q15345 812 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 WDR59Q6PJI9 974 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 PDE11AQ9HCR9 933 aa14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 FAM207AQ9NSI2 230 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-214ENST00000621814 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 MPHOSPH10O00566 681 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 IPO7O95373 1038 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 ATP1A1P05023 1023 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 EEF1GP26641 437 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 VSNL1P62760 191 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 PRR5LQ6MZQ0 368 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 ANKS1AQ92625 1134 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 MXD3Q9BW11 206 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 THAP9Q9H5L6 903 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 LRWD1Q9UFC0 647 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 IRS2Q9Y4H2 1338 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 SLC16A2P36021 539 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 DNM2P50570 870 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 KCNB1Q14721 858 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 CALCRLQ16602 461 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 UBE2SQ16763 222 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 PLEKP08567 350 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 PPP4CP60510 307 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 HERVK_113P62684 666 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 GALNT17Q6IS24 598 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 KRT26Q7Z3Y9 468 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 ZNF507Q8TCN5 953 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 NHEJ1Q9H9Q4 299 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 MYH8P13535 1937 aa14.45□□□□□ -0.1
CCDC88A-214ENST00000621814 SCN7AQ01118 1682 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 CCDC151A5D8V7 595 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 SLC37A4O43826 429 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 RAD51AP2Q09MP3 1159 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 DPP8Q6V1X1 898 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 C16orf86Q6ZW13 317 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 CAGE1Q8TC20 777 aa14.44□□□□□ -0.1
CCDC88A-214ENST00000621814 SMCR8Q8TEV9 937 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms