RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 Q9Y3F1 56 aa14.04□□□□□ -0.16
UPF3B-204ENST00000619445 COL6A3P12111 3177 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 A0A0D9SFI3 127 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 ASGR1P07306 291 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 CNTN2Q02246 1040 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 RRP12Q5JTH9 1297 aaKnown RBP14.03□□□□□ -0.16
UPF3B-204ENST00000619445 AKNAD1Q5T1N1 836 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 IQSEC1Q6DN90 963 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 NOL8Q76FK4 1167 aaKnown RBP14.03□□□□□ -0.16
UPF3B-204ENST00000619445 SH3RF1Q7Z6J0 888 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 ESR2Q92731 530 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 VTI1AQ96AJ9 217 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 LENG1Q96BZ8 264 aaPredicted RBP14.03□□□□□ -0.16
UPF3B-204ENST00000619445 FAM227BQ96M60 508 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 LNPKQ9C0E8 428 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 AP5M1Q9H0R1 490 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 RANBP17Q9H2T7 1088 aaKnown RBP14.03□□□□□ -0.16
UPF3B-204ENST00000619445 VTA1Q9NP79 307 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 CYP39A1Q9NYL5 469 aa14.03□□□□□ -0.16
UPF3B-204ENST00000619445 B4DLN1 442 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 ARVCFO00192 962 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 NMT2O60551 498 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 TIMP1P01033 207 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 CDK7P50613 346 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 MRPL12P52815 198 aaKnown RBP14.02□□□□□ -0.17
UPF3B-204ENST00000619445 FAAP100Q0VG06 881 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 NMIQ13287 307 aaPredicted RBP14.02□□□□□ -0.17
UPF3B-204ENST00000619445 GPATCH4Q5T3I0 446 aaKnown RBP14.02□□□□□ -0.17
UPF3B-204ENST00000619445 SYDE2Q5VT97 1194 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 CHD1LQ86WJ1 897 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 RILPL2Q969X0 211 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 RNPC3Q96LT9 517 aaKnown RBP14.02□□□□□ -0.17
UPF3B-204ENST00000619445 TMEM47Q9BQJ4 181 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 KATNBL1Q9H079 304 aa14.02□□□□□ -0.17
UPF3B-204ENST00000619445 PPIGQ13427 754 aaKnown RBP eCLIP14.01□□□□□ -0.17
UPF3B-204ENST00000619445 NSMFQ6X4W1 530 aa14.01□□□□□ -0.17
UPF3B-204ENST00000619445 IQCA1Q86XH1 822 aa14.01□□□□□ -0.17
UPF3B-204ENST00000619445 MORC4Q8TE76 937 aa14.01□□□□□ -0.17
UPF3B-204ENST00000619445 DIAPH3Q9NSV4 1193 aa14.01□□□□□ -0.17
UPF3B-204ENST00000619445 TBX21Q9UL17 535 aa14.01□□□□□ -0.17
UPF3B-204ENST00000619445 LAMA2P24043 3122 aaKnown RBP14.01□□□□□ -0.17
UPF3B-204ENST00000619445 WDR19Q8NEZ3 1342 aa14.01□□□□□ -0.17
UPF3B-204ENST00000619445 SOWAHBA6NEL2 793 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 ZNF213O14771 459 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 SDSP20132 328 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 NUCB1Q02818 461 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 FSCN1Q16658 493 aaKnown RBP14□□□□□ -0.17
UPF3B-204ENST00000619445 C9orf50Q5SZB4 431 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 MFSD5Q6N075 450 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 TLK2Q86UE8 772 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 DGKHQ86XP1 1220 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 TMEM199Q8N511 208 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 INCENPQ9NQS7 918 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 CTNNA3Q9UI47 895 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 MTMR7Q9Y216 660 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 GNEQ9Y223 722 aaKnown RBP14□□□□□ -0.17
UPF3B-204ENST00000619445 A0A0C4DFX4 3053 aa14□□□□□ -0.17
UPF3B-204ENST00000619445 LAMA4Q16363 1823 aa13.99□□□□□ -0.17
UPF3B-204ENST00000619445 MYADML2A6NDP7 307 aa13.99□□□□□ -0.17
UPF3B-204ENST00000619445 PDHBP11177 359 aa13.99□□□□□ -0.17
UPF3B-204ENST00000619445 ZNF543Q08ER8 600 aa13.99□□□□□ -0.17
UPF3B-204ENST00000619445 BRDTQ58F21 947 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-204ENST00000619445 ZNF589Q86UQ0 364 aaPredicted RBP13.99□□□□□ -0.17
UPF3B-204ENST00000619445 MTIF3Q9H2K0 278 aaKnown RBP13.99□□□□□ -0.17
UPF3B-204ENST00000619445 LRRC37A2A6NM11 1700 aa13.99□□□□□ -0.17
UPF3B-204ENST00000619445 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.98□□□□□ -0.17
UPF3B-204ENST00000619445 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.98□□□□□ -0.17
UPF3B-204ENST00000619445 NKRFO15226 690 aaKnown RBP eCLIP13.98□□□□□ -0.17
UPF3B-204ENST00000619445 ADCY6O43306 1168 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 SNHG28P0DPA3 235 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 MUM1L1Q5H9M0 696 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 PSRC1Q6PGN9 363 aaPredicted RBP13.98□□□□□ -0.17
UPF3B-204ENST00000619445 PLEKHM2Q8IWE5 1019 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 FAM126BQ8IXS8 530 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 DNERQ8NFT8 737 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 DSCC1Q9BVC3 393 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 GPCPD1Q9NPB8 672 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 RAD50Q92878 1312 aa13.98□□□□□ -0.17
UPF3B-204ENST00000619445 PTPDC1A2A3K4 754 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 DLL1O00548 723 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 CTAGE5O15320 804 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 DYNC1LI2O43237 492 aaPredicted RBP13.97□□□□□ -0.17
UPF3B-204ENST00000619445 ITGB8P26012 769 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 SLC16A2P36021 539 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 ALDH5A1P51649 535 aaPredicted RBP13.97□□□□□ -0.17
UPF3B-204ENST00000619445 HAND2P61296 217 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 BAATQ14032 418 aaPredicted RBP13.97□□□□□ -0.17
UPF3B-204ENST00000619445 IMMTQ16891 758 aaKnown RBP13.97□□□□□ -0.17
UPF3B-204ENST00000619445 DUSP28Q4G0W2 176 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 TTBK2Q6IQ55 1244 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 B4GALNT3Q6L9W6 998 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 TAPT1Q6NXT6 567 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 KIAA1211Q6ZU35 1233 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 SLC43A3Q8NBI5 491 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 RGS22Q8NE09 1264 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 CHMP4CQ96CF2 233 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 GUCD1Q96NT3 240 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 SEMA6BQ9H3T3 888 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 CNNM2Q9H8M5 875 aa13.97□□□□□ -0.17
UPF3B-204ENST00000619445 POLR3EQ9NVU0 708 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms