RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 QRICH1Q2TAL8 776 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 NSMFQ6X4W1 530 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 FAM133AQ8N9E0 248 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 TRPV1Q8NER1 839 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 CTCFLQ8NI51 663 aaPredicted RBP19.61■□□□□ 0.73
TRIM28-215ENST00000601150 MYL10Q9BUA6 226 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 NRBP1Q9UHY1 535 aa19.61■□□□□ 0.73
TRIM28-215ENST00000601150 BAZ2BQ9UIF8 2168 aaKnown RBP19.6■□□□□ 0.73
TRIM28-215ENST00000601150 ABCB11O95342 1321 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 SYNGAP1Q96PV0 1343 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 NFIBO00712 420 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 MSCO60682 206 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 CALM1P0DP23 149 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 CALM2P0DP24 149 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 CALM3P0DP25 149 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 CNTN2Q02246 1040 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 USH1GQ495M9 461 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 MAMDC4Q6UXC1 1216 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 SGMS1Q86VZ5 419 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 FBXO11Q86XK2 927 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 CLEC4DQ8WXI8 215 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 MTMR8Q96EF0 704 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 FGD4Q96M96 766 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 JAKMIP1Q96N16 626 aaKnown RBP19.6■□□□□ 0.73
TRIM28-215ENST00000601150 USP26Q9BXU7 913 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 DDX20Q9UHI6 824 aaKnown RBP19.6■□□□□ 0.73
TRIM28-215ENST00000601150 SLC12A7Q9Y666 1083 aa19.6■□□□□ 0.73
TRIM28-215ENST00000601150 PRAMEF19Q5SWL8 479 aa19.59■□□□□ 0.73
TRIM28-215ENST00000601150 LHX8Q68G74 356 aa19.59■□□□□ 0.73
TRIM28-215ENST00000601150 TCEANC2Q96MN5 208 aa19.59■□□□□ 0.73
TRIM28-215ENST00000601150 RIOX1Q9H6W3 641 aa19.59■□□□□ 0.73
TRIM28-215ENST00000601150 OGDHLQ9ULD0 1010 aa19.59■□□□□ 0.73
TRIM28-215ENST00000601150 CNPY2Q9Y2B0 182 aa19.59■□□□□ 0.73
TRIM28-215ENST00000601150 SOWAHBA6NEL2 793 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 SEPT4O43236 478 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 FARP2O94887 1054 aaPredicted RBP19.58■□□□□ 0.72
TRIM28-215ENST00000601150 PSMA5P28066 241 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 GNAQP50148 359 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 BAATQ14032 418 aaPredicted RBP19.58■□□□□ 0.72
TRIM28-215ENST00000601150 SLC35G1Q2M3R5 365 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 BLOC1S2Q6QNY1 142 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 SYNE3Q6ZMZ3 975 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 ANKLE1Q8NAG6 615 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 LZTS2Q9BRK4 669 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 AMNQ9BXJ7 453 aa19.58■□□□□ 0.72
TRIM28-215ENST00000601150 LRRC37A2A6NM11 1700 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 PTPDC1A2A3K4 754 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 ZBTB5O15062 677 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 CYTH3O43739 400 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 SNAI1O95863 264 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-215ENST00000601150 RNF207Q6ZRF8 634 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 UBE2Q1Q7Z7E8 422 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 HOMER1Q86YM7 354 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 RGS22Q8NE09 1264 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 MAF1Q9H063 256 aa19.57■□□□□ 0.72
TRIM28-215ENST00000601150 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.57■□□□□ 0.72
TRIM28-215ENST00000601150 MRPL11Q9Y3B7 192 aaKnown RBP19.57■□□□□ 0.72
TRIM28-215ENST00000601150 ASB14A6NK59 587 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 TNRC18O15417 2968 aaPredicted RBP19.56■□□□□ 0.72
TRIM28-215ENST00000601150 EIF5BO60841 1220 aaKnown RBP19.56■□□□□ 0.72
TRIM28-215ENST00000601150 CPA1P15085 419 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 RXRAP19793 462 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 SMARCA1P28370 1054 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 FGD1P98174 961 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 TRAF1Q13077 416 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 APOA5Q6Q788 366 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 SLC30A10Q6XR72 485 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 ARMCX2Q7L311 632 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 CCDC144CPQ8IYA2 1237 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 PIGSQ96S52 555 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 SPZ1Q9BXG8 430 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 ADD3Q9UEY8 706 aaKnown RBP19.56■□□□□ 0.72
TRIM28-215ENST00000601150 BRCA2P51587 3418 aa19.56■□□□□ 0.72
TRIM28-215ENST00000601150 PPP1R11O60927 126 aaPredicted RBP19.55■□□□□ 0.72
TRIM28-215ENST00000601150 ZNF865P0CJ78 1059 aaPredicted RBP19.55■□□□□ 0.72
TRIM28-215ENST00000601150 CASTP20810 708 aaKnown RBP19.55■□□□□ 0.72
TRIM28-215ENST00000601150 RPS6KB1P23443 525 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 CALML3P27482 149 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 RPS6P62753 249 aaKnown RBP19.55■□□□□ 0.72
TRIM28-215ENST00000601150 MICU3Q86XE3 530 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 MCF2L2Q86YR7 1114 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 RAB11FIP4Q86YS3 637 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 FANCBQ8NB91 859 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 ABHD16BQ9H3Z7 469 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 BRPF3Q9ULD4 1205 aa19.55■□□□□ 0.72
TRIM28-215ENST00000601150 ASTN1O14525 1302 aa19.54■□□□□ 0.72
TRIM28-215ENST00000601150 PNMA6FA0A0J9YX94 578 aa19.54■□□□□ 0.72
TRIM28-215ENST00000601150 ZBTB43O43298 467 aa19.54■□□□□ 0.72
TRIM28-215ENST00000601150 ACVR2BQ13705 512 aa19.54■□□□□ 0.72
TRIM28-215ENST00000601150 Q6ZUG5 572 aa19.54■□□□□ 0.72
TRIM28-215ENST00000601150 PURBQ96QR8 312 aaKnown RBP19.54■□□□□ 0.72
TRIM28-215ENST00000601150 ZHX1Q9UKY1 873 aaPredicted RBP19.54■□□□□ 0.72
TRIM28-215ENST00000601150 PCDHA1Q9Y5I3 950 aa19.54■□□□□ 0.72
TRIM28-215ENST00000601150 LOC102724159A0A0B4J2E5 919 aa19.53■□□□□ 0.72
TRIM28-215ENST00000601150 KLF18A0A0U1RQI7 1052 aa19.53■□□□□ 0.72
TRIM28-215ENST00000601150 PLEKHA8P1O95397 391 aa19.53■□□□□ 0.72
TRIM28-215ENST00000601150 AKR1A1P14550 325 aa19.53■□□□□ 0.72
TRIM28-215ENST00000601150 ALDH5A1P51649 535 aaPredicted RBP19.53■□□□□ 0.72
TRIM28-215ENST00000601150 PWP2Q15269 919 aaKnown RBP19.53■□□□□ 0.72
TRIM28-215ENST00000601150 ANO1Q5XXA6 986 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms