RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 UBE2Q2Q8WVN8 375 aa20.11■□□□□ 0.81
SHKBP1-224ENST00000600718 HPSEQ9Y251 543 aa20.11■□□□□ 0.81
SHKBP1-224ENST00000600718 CTAGE5O15320 804 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 PFKFB1P16118 471 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 IREB2P48200 963 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 MAP3K11Q16584 847 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 ARL6IP4Q66PJ3 421 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 C4orf32Q8N8J7 132 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 TBCKQ8TEA7 893 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 CDCA5Q96FF9 252 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 C12orf42Q96LP6 360 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 SLF1Q9BQI6 1058 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 FBXO28Q9NVF7 368 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 VCAM1P19320 739 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 CAMK4Q16566 473 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 UBE2SQ16763 222 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 USH1GQ495M9 461 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 FAM13BQ9NYF5 915 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 MRVI1Q9Y6F6 885 aa20.1■□□□□ 0.81
SHKBP1-224ENST00000600718 WDR90Q96KV7 1748 aa20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 LAD1O00515 517 aa20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 SOCS7O14512 581 aa20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 ZNF202O95125 648 aa20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 L1TD1Q5T7N2 865 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 RBM43Q6ZSC3 357 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 AFG3L2Q9Y4W6 797 aa20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 CSADQ9Y600 493 aa20.09■□□□□ 0.81
SHKBP1-224ENST00000600718 SYKP43405 635 aa20.08■□□□□ 0.81
SHKBP1-224ENST00000600718 LETM2Q2VYF4 491 aa20.08■□□□□ 0.81
SHKBP1-224ENST00000600718 TIGD1Q96MW7 591 aa20.08■□□□□ 0.81
SHKBP1-224ENST00000600718 CSRNP2Q9H175 543 aa20.08■□□□□ 0.81
SHKBP1-224ENST00000600718 RPAP3Q9H6T3 665 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-224ENST00000600718 SNCAIPQ9Y6H5 919 aa20.08■□□□□ 0.81
SHKBP1-224ENST00000600718 GRIN1Q05586 938 aa20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 AP3B2Q13367 1082 aa20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 VGLL4Q14135 290 aa20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 CCDC174Q6PII3 467 aa20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 RBM46Q8TBY0 533 aaKnown RBP20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 TANGO6Q9C0B7 1094 aa20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 TSPY26PQ9H489 355 aa20.08■□□□□ 0.8
SHKBP1-224ENST00000600718 MEIS2O14770 477 aa20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 CCNT1O60563 726 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 FDX1P10109 184 aa20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 TMOD4Q9NZQ9 345 aa20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 KCNH3Q9ULD8 1083 aa20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 MRPL11Q9Y3B7 192 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 ABCB11O95342 1321 aa20.07■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L15C9J2P7 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L13C9JLJ4 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L11C9JVI0 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L18D6R9N7 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L22D6RA61 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L17D6RBQ6 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L19D6RCP7 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L20D6RJB6 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 FOSP01100 380 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 PRPHP41219 470 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L24Q0WX57 530 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 DGKZQ13574 1117 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 USP17L6PQ6QN14 398 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 SAMD1Q6SPF0 538 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 NAP1L4Q99733 375 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 PNMA2Q9UL42 364 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 PPP1R9AQ9ULJ8 1098 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 PIK3CDO00329 1044 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 FLOT1O75955 427 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 HMGCS2P54868 508 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 SH3D19Q5HYK7 790 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 LDHDQ86WU2 507 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 ANKRD13AQ8IZ07 590 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 SDF4Q9BRK5 362 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 CLEC11AQ9Y240 323 aa20.06■□□□□ 0.8
SHKBP1-224ENST00000600718 VWA3AA6NCI4 1184 aa20.05■□□□□ 0.8
SHKBP1-224ENST00000600718 ICAM1P05362 532 aa20.05■□□□□ 0.8
SHKBP1-224ENST00000600718 MRE11P49959 708 aa20.05■□□□□ 0.8
SHKBP1-224ENST00000600718 SPECC1Q5M775 1068 aa20.05■□□□□ 0.8
SHKBP1-224ENST00000600718 DTHD1Q6ZMT9 781 aa20.05■□□□□ 0.8
SHKBP1-224ENST00000600718 OPLAHO14841 1288 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 NEMFO60524 1076 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 LONP1P36776 959 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 PPP4R3AQ6IN85 833 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 FUCA2Q9BTY2 467 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 TMEM60Q9H2L4 133 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 SLC38A10Q9HBR0 1119 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 ZBED4O75132 1171 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 CCDC192P0DO97 292 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 USP11P51784 963 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 IL17AQ16552 155 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 ARMC9Q7Z3E5 817 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 CKAP2LQ8IYA6 745 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 ANO3Q9BYT9 981 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 GRPEL1Q9HAV7 217 aa20.04■□□□□ 0.8
SHKBP1-224ENST00000600718 PHIPQ8WWQ0 1821 aa20.03■□□□□ 0.8
SHKBP1-224ENST00000600718 EDIL3O43854 480 aa20.03■□□□□ 0.8
SHKBP1-224ENST00000600718 OR52Z1P0C646 297 aa20.03■□□□□ 0.8
SHKBP1-224ENST00000600718 GCFC2P16383 781 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-224ENST00000600718 PPATQ06203 517 aa20.03■□□□□ 0.8
SHKBP1-224ENST00000600718 TTLL12Q14166 644 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-224ENST00000600718 CCPG1Q9ULG6 757 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms