RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CCDC178Q5BJE1 867 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 CCDC181Q5TID7 509 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 TSEN2Q8NCE0 465 aaKnown RBP20.48■□□□□ 0.87
UPF1-210ENST00000600689 ATRNO75882 1429 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 CYLC1P35663 651 aaPredicted RBP20.47■□□□□ 0.87
UPF1-210ENST00000600689 ERFEQ4G0M1 354 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 PARP10Q53GL7 1025 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 CCDC70Q6NSX1 233 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 DHX37Q8IY37 1157 aaKnown RBP20.47■□□□□ 0.87
UPF1-210ENST00000600689 CSGALNACT2Q8N6G5 542 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 IFT81Q8WYA0 676 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 VIPAS39Q9H9C1 493 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 FAM207AQ9NSI2 230 aaPredicted RBP20.47■□□□□ 0.87
UPF1-210ENST00000600689 KRT14P02533 472 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 TRIM14Q14142 442 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 FAM182BQ5T319 152 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 SECISBP2LQ93073 1101 aaKnown RBP20.47■□□□□ 0.87
UPF1-210ENST00000600689 CAPN7Q9Y6W3 813 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 LRRC10BA6NIK2 292 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 LGALS16A8MUM7 142 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 NDUFAB1O14561 156 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 MCM3P25205 808 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 ALX1Q15699 326 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 TMTC2Q8N394 836 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 CCDC42Q96M95 316 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 ZSCAN10Q96SZ4 725 aaPredicted RBP20.47■□□□□ 0.87
UPF1-210ENST00000600689 TUBGCP2Q9BSJ2 902 aa20.47■□□□□ 0.87
UPF1-210ENST00000600689 ZSCAN5CA6NGD5 496 aaPredicted RBP20.46■□□□□ 0.87
UPF1-210ENST00000600689 BUB1O43683 1085 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 INPP5BP32019 993 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 MS4A14Q96JA4 679 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 MYO1FO00160 1098 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 FECHP22830 423 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 GUCY2FP51841 1108 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 ATP2C1P98194 919 aaPredicted RBP20.46■□□□□ 0.87
UPF1-210ENST00000600689 SPA17Q15506 151 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 PTPROQ16827 1216 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 PAPD7Q5XG87 772 aaKnown RBP20.46■□□□□ 0.87
UPF1-210ENST00000600689 MMS22LQ6ZRQ5 1243 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 CCDC24Q8N4L8 307 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 C8orf37Q96NL8 207 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 RNF41Q9H4P4 317 aaPredicted RBP20.46■□□□□ 0.87
UPF1-210ENST00000600689 EP400Q96L91 3159 aa20.46■□□□□ 0.87
UPF1-210ENST00000600689 APBA1Q02410 837 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 TMC4Q7Z404 712 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 C2CD5Q86YS7 1000 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 SRBD1Q8N5C6 995 aaKnown RBP20.45■□□□□ 0.86
UPF1-210ENST00000600689 LTBP4Q8N2S1 1624 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 GYG1P46976 350 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 JAG2Q9Y219 1238 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 H7C1D1 291 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 RNF187Q5TA31 235 aaPredicted RBP20.45■□□□□ 0.86
UPF1-210ENST00000600689 BARGINQ6ZT62 677 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 MSL3Q8N5Y2 521 aaKnown RBP20.45■□□□□ 0.86
UPF1-210ENST00000600689 FAM184BQ9ULE4 1060 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 CAPN11Q9UMQ6 739 aa20.45■□□□□ 0.86
UPF1-210ENST00000600689 FAM170AA1A519 330 aa20.44■□□□□ 0.86
UPF1-210ENST00000600689 SF3A3Q12874 501 aaKnown RBP eCLIP20.44■□□□□ 0.865e-8■■■■■ 27.5
UPF1-210ENST00000600689 SEC23AQ15436 765 aa20.44■□□□□ 0.86
UPF1-210ENST00000600689 ZNF263O14978 683 aa20.44■□□□□ 0.86
UPF1-210ENST00000600689 PPFIA1Q13136 1202 aa20.44■□□□□ 0.86
UPF1-210ENST00000600689 NPY5RQ15761 445 aa20.44■□□□□ 0.86
UPF1-210ENST00000600689 NOC4LQ9BVI4 516 aaKnown RBP20.44■□□□□ 0.86
UPF1-210ENST00000600689 MMRN2Q9H8L6 949 aa20.44■□□□□ 0.86
UPF1-210ENST00000600689 HNRNPH1P31943 449 aaKnown RBP20.43■□□□□ 0.86
UPF1-210ENST00000600689 UBA7P41226 1012 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 ADSSL1Q8N142 457 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 PROCA1Q8NCQ7 364 aaPredicted RBP20.43■□□□□ 0.86
UPF1-210ENST00000600689 DNAJC7Q99615 494 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 ARAP2Q8WZ64 1704 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 PSMA7O14818 248 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 AKR1B10O60218 316 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 GUCY1A3Q02108 690 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 IQCA1Q86XH1 822 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 IFIH1Q9BYX4 1025 aaKnown RBP20.43■□□□□ 0.86
UPF1-210ENST00000600689 EXOC1Q9NV70 894 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 RMND1Q9NWS8 449 aa20.43■□□□□ 0.86
UPF1-210ENST00000600689 PRPF3O43395 683 aaKnown RBP20.42■□□□□ 0.86
UPF1-210ENST00000600689 FCER1AP12319 257 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 TTMPQ5BVD1 217 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 SPATA4Q8NEY3 305 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 MAGEB6P1A0A0J9YX57 407 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 CNOT6LQ96LI5 555 aaKnown RBP20.42■□□□□ 0.86
UPF1-210ENST00000600689 RASSF10A6NK89 507 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 EIF3HO15372 352 aaKnown RBP eCLIP20.42■□□□□ 0.863e-6■■□□□ 12.9
UPF1-210ENST00000600689 FUT2Q10981 343 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 MCTP2Q6DN12 878 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 CREG2Q8IUH2 290 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 TMEM60Q9H2L4 133 aa20.42■□□□□ 0.86
UPF1-210ENST00000600689 ECM29Q5VYK3 1845 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 EPHB6O15197 1021 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 HSF2BPO75031 334 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 SEC24CP53992 1094 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 CT47A1Q5JQC4 288 aaPredicted RBP20.41■□□□□ 0.86
UPF1-210ENST00000600689 TBC1D9BQ66K14 1250 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 FAM205AQ6ZU69 1335 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 USP17L12C9JPN9 530 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 USP17L21D6R901 530 aa20.41■□□□□ 0.86
UPF1-210ENST00000600689 HPDP32754 393 aaPredicted RBP20.41■□□□□ 0.86
UPF1-210ENST00000600689 PDE4DQ08499 809 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms