RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 CYP39A1Q9NYL5 469 aa28.26■■■□□ 2.11
LSM4-202ENST00000593564 GNEQ9Y223 722 aaKnown RBP28.26■■■□□ 2.11
LSM4-202ENST00000593564 TMEM265A0A087WTH1 108 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 A0A0D9SFI3 127 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 FGAP02671 866 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 CCDC96Q2M329 555 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 RANBP17Q9H2T7 1088 aaKnown RBP28.25■■■□□ 2.11
LSM4-202ENST00000593564 CCPG1Q9ULG6 757 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 MTMR7Q9Y216 660 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 CDH23Q9H251 3354 aa28.25■■■□□ 2.11
LSM4-202ENST00000593564 ICAM1P05362 532 aa28.24■■■□□ 2.11
LSM4-202ENST00000593564 MFSD5Q6N075 450 aa28.24■■■□□ 2.11
LSM4-202ENST00000593564 BTNL9Q6UXG8 535 aa28.24■■■□□ 2.11
LSM4-202ENST00000593564 NOL8Q76FK4 1167 aaKnown RBP28.24■■■□□ 2.11
LSM4-202ENST00000593564 PHF6Q8IWS0 365 aaKnown RBP eCLIP28.24■■■□□ 2.11
LSM4-202ENST00000593564 FAM126BQ8IXS8 530 aa28.24■■■□□ 2.11
LSM4-202ENST00000593564 TOMM22Q9NS69 142 aa28.24■■■□□ 2.11
LSM4-202ENST00000593564 ZMYM6O95789 1325 aa28.23■■■□□ 2.11
LSM4-202ENST00000593564 TOP1P11387 765 aaKnown RBP28.23■■■□□ 2.11
LSM4-202ENST00000593564 BEX3Q00994 111 aa28.23■■■□□ 2.11
LSM4-202ENST00000593564 TLK2Q86UE8 772 aa28.23■■■□□ 2.11
LSM4-202ENST00000593564 TCP11L1Q9NUJ3 509 aa28.23■■■□□ 2.11
LSM4-202ENST00000593564 HSPD1P10809 573 aaKnown RBP28.22■■■□□ 2.11
LSM4-202ENST00000593564 RRP12Q5JTH9 1297 aaKnown RBP28.22■■■□□ 2.11
LSM4-202ENST00000593564 NSMFQ6X4W1 530 aa28.22■■■□□ 2.11
LSM4-202ENST00000593564 TMEM47Q9BQJ4 181 aa28.22■■■□□ 2.11
LSM4-202ENST00000593564 LRRC37A2A6NM11 1700 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 EYSQ5T1H1 3165 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 TLR3O15455 904 aaKnown RBP28.21■■■□□ 2.11
LSM4-202ENST00000593564 CABYRO75952 493 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 SMPD1P17405 629 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 SLC16A2P36021 539 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 PPIGQ13427 754 aaKnown RBP eCLIP28.21■■■□□ 2.11
LSM4-202ENST00000593564 FSCN1Q16658 493 aaKnown RBP28.21■■■□□ 2.11
LSM4-202ENST00000593564 SYDE2Q5VT97 1194 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 TTBK2Q6IQ55 1244 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 ZNF589Q86UQ0 364 aaPredicted RBP28.21■■■□□ 2.11
LSM4-202ENST00000593564 MORC4Q8TE76 937 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 AP5M1Q9H0R1 490 aa28.21■■■□□ 2.11
LSM4-202ENST00000593564 DDX49Q9Y6V7 483 aaKnown RBP28.21■■■□□ 2.11
LSM4-202ENST00000593564 HSFX4A0A1B0GTS1 333 aaPredicted RBP28.2■■■□□ 2.1
LSM4-202ENST00000593564 HSFX3A0A1B0GWH4 333 aaPredicted RBP28.2■■■□□ 2.1
LSM4-202ENST00000593564 NMIQ13287 307 aaPredicted RBP28.2■■■□□ 2.1
LSM4-202ENST00000593564 IQSEC1Q6DN90 963 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 TAPT1Q6NXT6 567 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 FBXO16Q8IX29 292 aaPredicted RBP28.2■■■□□ 2.1
LSM4-202ENST00000593564 SLC43A3Q8NBI5 491 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 MYLIPQ8WY64 445 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.2■■■□□ 2.1
LSM4-202ENST00000593564 VTA1Q9NP79 307 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 PDGFCQ9NRA1 345 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 Q9Y3F1 56 aa28.2■■■□□ 2.1
LSM4-202ENST00000593564 CD4P01730 458 aa28.19■■■□□ 2.1
LSM4-202ENST00000593564 CXCL17Q6UXB2 119 aa28.19■■■□□ 2.1
LSM4-202ENST00000593564 TMEM199Q8N511 208 aa28.19■■■□□ 2.1
LSM4-202ENST00000593564 MAFAQ8NHW3 353 aaPredicted RBP28.19■■■□□ 2.1
LSM4-202ENST00000593564 LNPKQ9C0E8 428 aa28.19■■■□□ 2.1
LSM4-202ENST00000593564 CCDC171Q6TFL3 1326 aa28.18■■■□□ 2.1
LSM4-202ENST00000593564 DYNC1LI2O43237 492 aaPredicted RBP28.18■■■□□ 2.1
LSM4-202ENST00000593564 ZEB2O60315 1214 aa28.18■■■□□ 2.1
LSM4-202ENST00000593564 PCP11498 1178 aaKnown RBP28.18■■■□□ 2.1
LSM4-202ENST00000593564 AAMPQ13685 434 aa28.18■■■□□ 2.1
LSM4-202ENST00000593564 C16orf59Q7L2K0 433 aa28.18■■■□□ 2.1
LSM4-202ENST00000593564 EEPD1Q7L9B9 569 aa28.18■■■□□ 2.1
LSM4-202ENST00000593564 PURBQ96QR8 312 aaKnown RBP28.18■■■□□ 2.1
LSM4-202ENST00000593564 SEZ6LQ9BYH1 1024 aa28.18■■■□□ 2.1
LSM4-202ENST00000593564 FRMPD2Q68DX3 1309 aaPredicted RBP28.18■■■□□ 2.1
LSM4-202ENST00000593564 LOC102724159A0A0B4J2E5 919 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 PDHBP11177 359 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 CSF2RAP15509 400 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 DNAJB2P25686 324 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 HAND2P61296 217 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 BAATQ14032 418 aaPredicted RBP28.17■■■□□ 2.1
LSM4-202ENST00000593564 PWP2Q15269 919 aaKnown RBP28.17■■■□□ 2.1
LSM4-202ENST00000593564 TMEM240Q5SV17 173 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 TTC14Q96N46 770 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 ADD3Q9UEY8 706 aaKnown RBP28.17■■■□□ 2.1
LSM4-202ENST00000593564 PNMA2Q9UL42 364 aa28.17■■■□□ 2.1
LSM4-202ENST00000593564 LCTP09848 1927 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 TRIM6-TRIM34B2RNG4 842 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 NFIBO00712 420 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 FOSL2P15408 326 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 PTGS1P23219 599 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 ITGA7Q13683 1181 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 AKNAD1Q5T1N1 836 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 RASIP1Q5U651 963 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 PPP1R12CQ9BZL4 782 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 GPCPD1Q9NPB8 672 aa28.16■■■□□ 2.1
LSM4-202ENST00000593564 PSRC1Q6PGN9 363 aaPredicted RBP28.15■■■□□ 2.1
LSM4-202ENST00000593564 MFSD6Q6ZSS7 791 aa28.15■■■□□ 2.1
LSM4-202ENST00000593564 SMC5Q8IY18 1101 aa28.15■■■□□ 2.1
LSM4-202ENST00000593564 RILPL2Q969X0 211 aa28.15■■■□□ 2.1
LSM4-202ENST00000593564 PRUNE2Q8WUY3 3088 aa28.14■■■□□ 2.1
LSM4-202ENST00000593564 SNHG28P0DPA3 235 aa28.14■■■□□ 2.1
LSM4-202ENST00000593564 ALDH5A1P51649 535 aaPredicted RBP28.14■■■□□ 2.1
LSM4-202ENST00000593564 MFAP1P55081 439 aaKnown RBP28.14■■■□□ 2.1
LSM4-202ENST00000593564 ZNF543Q08ER8 600 aa28.14■■■□□ 2.1
LSM4-202ENST00000593564 TMEM63BQ5T3F8 832 aa28.14■■■□□ 2.1
LSM4-202ENST00000593564 KIAA1211Q6ZU35 1233 aa28.14■■■□□ 2.1
LSM4-202ENST00000593564 TBC1D10CQ8IV04 446 aa28.14■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms