RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 TRIM43BA6NCK2 446 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 GTPBP6O43824 516 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-207ENST00000591519 DUSP11O75319 330 aaKnown RBP12.35□□□□□ -0.43
VPS4B-207ENST00000591519 FGRP09769 529 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 TLE2Q04725 743 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 CCSAPQ6IQ19 270 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-207ENST00000591519 LRRC47Q8N1G4 583 aaKnown RBP12.35□□□□□ -0.43
VPS4B-207ENST00000591519 CHURC1Q8WUH1 139 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 STAG1Q8WVM7 1258 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 KIFC2Q96AC6 838 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 TRIM43Q96BQ3 446 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-207ENST00000591519 EVI5LQ96CN4 794 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 FGD4Q96M96 766 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 TOX2Q96NM4 488 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 RAVER2Q9HCJ3 691 aaKnown RBP12.35□□□□□ -0.43
VPS4B-207ENST00000591519 PDLIM7Q9NR12 457 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 ANAPC4Q9UJX5 808 aa12.35□□□□□ -0.43
VPS4B-207ENST00000591519 LTBP2Q14767 1821 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 A0A1W2PQ45 241 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-207ENST00000591519 A0A1W2PQY0 241 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 MOXD2PA6NHM9 499 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 KIAA0355O15063 1070 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 CST5P28325 142 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ACLYP53396 1101 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 NKX3-2P78367 333 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 HDAC1Q13547 482 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ACVR2BQ13705 512 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 SHHQ15465 462 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ALX1Q15699 326 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ANKRD45Q5TZF3 282 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ANKRD33Q7Z3H0 272 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 SH3RF1Q7Z6J0 888 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 FAM160B2Q86V87 743 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ANKRD35Q8N283 1001 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 EXOC6Q8TAG9 804 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 NUP133Q8WUM0 1156 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 BADQ92934 168 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 ABHD16BQ9H3Z7 469 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 IL17RBQ9NRM6 502 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 VPS9D1Q9Y2B5 631 aa12.34□□□□□ -0.43
VPS4B-207ENST00000591519 CTDP1Q9Y5B0 961 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-207ENST00000591519 TMEM232C9JQI7 657 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 PDE4AP27815 886 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 SLC1A4P43007 532 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 STAT2P52630 851 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 PDE1AP54750 535 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 TKFCQ3LXA3 575 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 RCSD1Q6JBY9 416 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 FAM133AQ8N9E0 248 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 KATNBL1Q9H079 304 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 HELLSQ9NRZ9 838 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-207ENST00000591519 ZNF536O15090 1300 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 ELP1O95163 1332 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 SYNRGQ9UMZ2 1314 aa12.33□□□□□ -0.44
VPS4B-207ENST00000591519 ORC4O43929 436 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 CLTBP09497 229 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 MCCP23508 829 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 ITGB8P26012 769 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 SLC4A3P48751 1232 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 CDK7P50613 346 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 FOSBP53539 338 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 GJA9P57773 515 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 KCNA10Q16322 511 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 C9orf50Q5SZB4 431 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 CCDC129Q6ZRS4 1044 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 LARP6Q9BRS8 491 aaKnown RBP12.32□□□□□ -0.44
VPS4B-207ENST00000591519 UPF3AQ9H1J1 476 aaKnown RBP12.32□□□□□ -0.44
VPS4B-207ENST00000591519 INCENPQ9NQS7 918 aa12.32□□□□□ -0.44
VPS4B-207ENST00000591519 PRDM5Q9NQX1 630 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-207ENST00000591519 TSPY2A6NKD2 308 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 CTDSPL2Q05D32 466 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 FAAP100Q0VG06 881 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 AAMPQ13685 434 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 CCDC144BQ3MJ40 725 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 MCMDC2Q4G0Z9 681 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 VPS53Q5VIR6 699 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 ARMCX2Q7L311 632 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 PCSK9Q8NBP7 692 aaKnown RBP12.31□□□□□ -0.44
VPS4B-207ENST00000591519 LENG1Q96BZ8 264 aaPredicted RBP12.31□□□□□ -0.44
VPS4B-207ENST00000591519 AGBL1Q96MI9 1066 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 ACAD9Q9H845 621 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 STARD7Q9NQZ5 370 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 TCP11L1Q9NUJ3 509 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 ZHX1Q9UKY1 873 aaPredicted RBP12.31□□□□□ -0.44
VPS4B-207ENST00000591519 STX8Q9UNK0 236 aa12.31□□□□□ -0.44
VPS4B-207ENST00000591519 SOWAHBA6NEL2 793 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 DCDC2CA8MYV0 355 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 CTAGE5O15320 804 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 ADCY6O43306 1168 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 FGAP02671 866 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 ASGR1P07306 291 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 SMAD3P84022 425 aaKnown RBP12.3□□□□□ -0.44
VPS4B-207ENST00000591519 CNTN2Q02246 1040 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 BTNL9Q6UXG8 535 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 CCDC144CPQ8IYA2 1237 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 GLT1D1Q96MS3 346 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 GUCD1Q96NT3 240 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 SPC25Q9HBM1 224 aa12.3□□□□□ -0.44
VPS4B-207ENST00000591519 A1CFQ9NQ94 594 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms