RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 GNASQ5JWF2 1037 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 TMEM240Q5SV17 173 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 TAPT1Q6NXT6 567 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 BTNL9Q6UXG8 535 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 KCTD1Q719H9 257 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 MAFAQ8NHW3 353 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-204ENST00000590559 TRERF1Q96PN7 1200 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 SPC25Q9HBM1 224 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 CYP39A1Q9NYL5 469 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 PRR12Q9ULL5 1215 aa13.92□□□□□ -0.18
CLIP3-204ENST00000590559 GRIN2DO15399 1336 aa13.91□□□□□ -0.18
CLIP3-204ENST00000590559 ASB14A6NK59 587 aa13.91□□□□□ -0.18
CLIP3-204ENST00000590559 TSPY2A6NKD2 308 aa13.91□□□□□ -0.18
CLIP3-204ENST00000590559 TNFAIP2Q03169 654 aa13.91□□□□□ -0.18
CLIP3-204ENST00000590559 TICAM2Q86XR7 235 aa13.91□□□□□ -0.18
CLIP3-204ENST00000590559 RANBP17Q9H2T7 1088 aaKnown RBP13.91□□□□□ -0.18
CLIP3-204ENST00000590559 STX8Q9UNK0 236 aa13.91□□□□□ -0.18
CLIP3-204ENST00000590559 DDX49Q9Y6V7 483 aaKnown RBP13.91□□□□□ -0.18
CLIP3-204ENST00000590559 ZMYM6O95789 1325 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 LAMA4Q16363 1823 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 ICAM1P05362 532 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 ALAS1P13196 640 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 SMPD1P17405 629 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 PTGS1P23219 599 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 DNAJB2P25686 324 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 SNAP25P60880 206 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 BEX3Q00994 111 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 PPIGQ13427 754 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLIP3-204ENST00000590559 GRIN2CQ14957 1233 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 TMEM63BQ5T3F8 832 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 EVI5LQ96CN4 794 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 PDGFCQ9NRA1 345 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 HELLSQ9NRZ9 838 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 TCP11L1Q9NUJ3 509 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 Q9Y3F1 56 aa13.9□□□□□ -0.18
CLIP3-204ENST00000590559 SCN10AQ9Y5Y9 1956 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 CABYRO75952 493 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 FGAP02671 866 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 CSF2RAP15509 400 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 PDE1AP54750 535 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 RRP1P56182 461 aaKnown RBP13.89□□□□□ -0.19
CLIP3-204ENST00000590559 IQSEC1Q6DN90 963 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 CCDC174Q6PII3 467 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 TLK2Q86UE8 772 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 DCAF4Q8WV16 495 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 VWCEQ96DN2 955 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 PURBQ96QR8 312 aaKnown RBP13.89□□□□□ -0.19
CLIP3-204ENST00000590559 SEZ6LQ9BYH1 1024 aa13.89□□□□□ -0.19
CLIP3-204ENST00000590559 LOC102724159A0A0B4J2E5 919 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 A0A0D9SFI3 127 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 RBM47A0AV96 593 aaKnown RBP13.88□□□□□ -0.19
CLIP3-204ENST00000590559 RANBP6O60518 1105 aaKnown RBP13.88□□□□□ -0.19
CLIP3-204ENST00000590559 FOSL2P15408 326 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 HDAC1Q13547 482 aaPredicted RBP13.88□□□□□ -0.19
CLIP3-204ENST00000590559 PWP2Q15269 919 aaKnown RBP13.88□□□□□ -0.19
CLIP3-204ENST00000590559 FSCN1Q16658 493 aaKnown RBP13.88□□□□□ -0.19
CLIP3-204ENST00000590559 TTBK2Q6IQ55 1244 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 CXCL17Q6UXB2 119 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 TMEM199Q8N511 208 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 CHMP4CQ96CF2 233 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 FAM227BQ96M60 508 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 TMEM47Q9BQJ4 181 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 PBX4Q9BYU1 374 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 ZNF576Q9H609 170 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 VTA1Q9NP79 307 aa13.88□□□□□ -0.19
CLIP3-204ENST00000590559 TTC28Q96AY4 2481 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 TLR3O15455 904 aaKnown RBP13.87□□□□□ -0.19
CLIP3-204ENST00000590559 SNHG28P0DPA3 235 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 CYP2C18P33260 490 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 PBX2P40425 430 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 IKQ13123 557 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-204ENST00000590559 ITGA7Q13683 1181 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 ANKRD45Q5TZF3 282 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 ZNF365Q70YC5 407 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 ZNF589Q86UQ0 364 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-204ENST00000590559 FBXO16Q8IX29 292 aaPredicted RBP13.87□□□□□ -0.19
CLIP3-204ENST00000590559 CLEC4DQ8WXI8 215 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 HERVK_113Q902F9 699 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 VTI1AQ96AJ9 217 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 PPP1R12CQ9BZL4 782 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 IL23AQ9NPF7 189 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 CCPG1Q9ULG6 757 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 UMODL1Q5DID0 1318 aa13.87□□□□□ -0.19
CLIP3-204ENST00000590559 SCN5AQ14524 2016 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 MYO9BQ13459 2157 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 GRXCR1A8MXD5 290 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 NFIBO00712 420 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 DYNC1LI2O43237 492 aaPredicted RBP13.86□□□□□ -0.19
CLIP3-204ENST00000590559 ACRP10323 421 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 HSPD1P10809 573 aaKnown RBP13.86□□□□□ -0.19
CLIP3-204ENST00000590559 TOP1P11387 765 aaKnown RBP13.86□□□□□ -0.19
CLIP3-204ENST00000590559 SLC16A2P36021 539 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 ALDH5A1P51649 535 aaPredicted RBP13.86□□□□□ -0.19
CLIP3-204ENST00000590559 DUSP28Q4G0W2 176 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 MCMDC2Q4G0Z9 681 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 SYDE2Q5VT97 1194 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 PSRC1Q6PGN9 363 aaPredicted RBP13.86□□□□□ -0.19
CLIP3-204ENST00000590559 USP38Q8NB14 1042 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 TIFAQ96CG3 184 aa13.86□□□□□ -0.19
CLIP3-204ENST00000590559 NOC4LQ9BVI4 516 aaKnown RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms