RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 DHX29Q7Z478 1369 aaKnown RBP4.51□□□□□ -1.69
ZNF540-207ENST00000589285 EIF4EBP3O60516 100 aaPredicted RBP4.51□□□□□ -1.69
ZNF540-207ENST00000589285 RPL10P27635 214 aaKnown RBP4.51□□□□□ -1.69
ZNF540-207ENST00000589285 CAP2P40123 477 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 ZC3H6P61129 1189 aaKnown RBP4.51□□□□□ -1.69
ZNF540-207ENST00000589285 NBPF9Q3BBW0 867 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 ZNF792Q3KQV3 632 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 HRASLS5Q96KN8 279 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 RXFP1Q9HBX9 757 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 AP5S1Q9NUS5 200 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 SLAMF8Q9P0V8 285 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 GTF2IRD1Q9UHL9 959 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 MED14O60244 1454 aa4.51□□□□□ -1.69
ZNF540-207ENST00000589285 MEIS3P2A8K0S8 358 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 RNASE1P07998 156 aaKnown RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 LTKP29376 864 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 ZNF445P59923 1031 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 MBNL3Q9NUK0 354 aaKnown RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 PFDN2Q9UHV9 154 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 MAPK8IP1Q9UQF2 711 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 MYO3AQ8NEV4 1616 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 ROBO2Q9HCK4 1378 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 KIAA1324LA8MWY0 1029 aaPredicted RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 STXBP3O00186 592 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 TNFRSF10CO14798 259 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 USP2O75604 605 aaPredicted RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 ZNF865P0CJ78 1059 aaPredicted RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 EGR3Q06889 387 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 SPATC1Q76KD6 591 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 BSDC1Q9NW68 430 aaPredicted RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 DUSP13Q9UII6 198 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 CCDC144AA2RUR9 1427 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 GJB6O95452 261 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 ZEB1P37275 1124 aaPredicted RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 GRIK1P39086 918 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 HNRNPUQ00839 825 aaKnown RBP eCLIP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 IFI16Q16666 785 aaKnown RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 TCTN2Q96GX1 697 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 CARD11Q9BXL7 1154 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 GPRC5CQ9NQ84 441 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 SUCOQ9UBS9 1254 aaKnown RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 GPR55Q9Y2T6 319 aaPredicted RBP4.5□□□□□ -1.69
ZNF540-207ENST00000589285 SUGT1Q9Y2Z0 365 aa4.5□□□□□ -1.69
ZNF540-207ENST00000589285 FAM221BA6H8Z2 402 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 CHMP4BP1P59074 171 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 NOL9Q5SY16 702 aaKnown RBP4.49□□□□□ -1.69
ZNF540-207ENST00000589285 SCARA3Q6AZY7 606 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 NBPF11Q86T75 865 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 LRRN4CLQ8ND94 238 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 HDAC8Q9BY41 377 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 KANSL2Q9H9L4 492 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 SUSD2Q9UGT4 822 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 PLA2G2DQ9UNK4 145 aa4.49□□□□□ -1.69
ZNF540-207ENST00000589285 LAMC1P11047 1609 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 TMEM82A0PJX8 343 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 CD247P20963 164 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 ETV3P41162 512 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 CLEC16AQ2KHT3 1053 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 FIBCD1Q8N539 461 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 GIMAP7Q8NHV1 300 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 FBLN5Q9UBX5 448 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 TCFL5Q9UL49 500 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 ADGRF5Q8IZF2 1346 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 ROCK1Q13464 1354 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.48□□□□□ -1.69
ZNF540-207ENST00000589285 PZPP20742 1482 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 SRCAPQ6ZRS2 3230 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 RNF141Q8WVD5 230 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 SEC16BQ96JE7 1060 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 CDADC1Q9BWV3 514 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 GP6Q9HCN6 339 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 LMTK2Q8IWU2 1503 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 NWD1Q149M9 1564 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 IGSF3O75054 1194 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 TACR1P25103 407 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 USHBP1Q8N6Y0 703 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 TM9SF2Q99805 663 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 RC3H2Q9HBD1 1191 aaKnown RBP4.48□□□□□ -1.69
ZNF540-207ENST00000589285 ZNF214Q9UL59 606 aaPredicted RBP4.48□□□□□ -1.69
ZNF540-207ENST00000589285 ZMYM3Q14202 1370 aa4.48□□□□□ -1.69
ZNF540-207ENST00000589285 ANKRD30BQ9BXX2 1392 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 ST20-MTHFSA0A0A6YYL1 179 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 CD3EP07766 207 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 SYPP08247 313 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 HSPA5P11021 654 aaKnown RBP4.47□□□□□ -1.69
ZNF540-207ENST00000589285 SRFP11831 508 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 BBS9Q3SYG4 887 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.47□□□□□ -1.69
ZNF540-207ENST00000589285 HCFC2Q9Y5Z7 792 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 PSPNO60542 156 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 KCNH1O95259 989 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 PMS1P54277 932 aaKnown RBP4.47□□□□□ -1.69
ZNF540-207ENST00000589285 DSCC1Q9BVC3 393 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 USP35Q9P2H5 1018 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 PCDHB12Q9Y5F1 795 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 SPATA31D1Q6ZQQ2 1576 aa4.47□□□□□ -1.69
ZNF540-207ENST00000589285 PRAG1Q86YV5 1406 aa4.46□□□□□ -1.69
ZNF540-207ENST00000589285 TMEM265A0A087WTH1 108 aa4.46□□□□□ -1.69
ZNF540-207ENST00000589285 GNL2Q13823 731 aaKnown RBP4.46□□□□□ -1.69
ZNF540-207ENST00000589285 GAB4Q2WGN9 574 aa4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms