RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 SMCHD1A6NHR9 2005 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 LOC285556D6RIA3 1793 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 FAM205CA6NFA0 338 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 IRF6O14896 467 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 NASPP49321 788 aaPredicted RBP25.47■■□□□ 1.67
ATG4D-209ENST00000588857 TOB1P50616 345 aaPredicted RBP25.47■■□□□ 1.67
ATG4D-209ENST00000588857 MAP2K1Q02750 393 aaPredicted RBP25.47■■□□□ 1.67
ATG4D-209ENST00000588857 EARS2Q5JPH6 523 aaKnown RBP25.47■■□□□ 1.67
ATG4D-209ENST00000588857 KRT25Q7Z3Z0 450 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 RASGRP4Q8TDF6 673 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 OPTNQ96CV9 577 aa25.47■■□□□ 1.67
ATG4D-209ENST00000588857 CTDP1Q9Y5B0 961 aaPredicted RBP25.47■■□□□ 1.67
ATG4D-209ENST00000588857 FDX1P10109 184 aa25.46■■□□□ 1.67
ATG4D-209ENST00000588857 ATP2B1P20020 1258 aa25.46■■□□□ 1.67
ATG4D-209ENST00000588857 ZNF157P51786 506 aaPredicted RBP25.46■■□□□ 1.67
ATG4D-209ENST00000588857 UBE2HP62256 183 aa25.46■■□□□ 1.67
ATG4D-209ENST00000588857 SF3A1Q15459 793 aaKnown RBP25.46■■□□□ 1.67
ATG4D-209ENST00000588857 CCDC102AQ96A19 550 aa25.46■■□□□ 1.67
ATG4D-209ENST00000588857 DDX49Q9Y6V7 483 aaKnown RBP25.46■■□□□ 1.67
ATG4D-209ENST00000588857 RLFQ13129 1914 aa25.45■■□□□ 1.67
ATG4D-209ENST00000588857 GOLGA6L4A6NEF3 574 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L15C9J2P7 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L13C9JLJ4 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L11C9JVI0 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L18D6R9N7 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L22D6RA61 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L17D6RBQ6 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L19D6RCP7 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L20D6RJB6 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 TRAPPC10P48553 1259 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 USP17L24Q0WX57 530 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 NOGQ13253 232 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 NOM1Q5C9Z4 860 aaKnown RBP25.45■■□□□ 1.66
ATG4D-209ENST00000588857 LINC00301Q8NCQ3 95 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 KCNG4Q8TDN1 519 aa25.45■■□□□ 1.66
ATG4D-209ENST00000588857 BIN2Q9UBW5 565 aaPredicted RBP25.45■■□□□ 1.66
ATG4D-209ENST00000588857 FAM155AB1AL88 458 aaPredicted RBP25.44■■□□□ 1.66
ATG4D-209ENST00000588857 ZBED4O75132 1171 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 GADD45BO75293 160 aaPredicted RBP25.44■■□□□ 1.66
ATG4D-209ENST00000588857 COG2Q14746 738 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 GADL1Q6ZQY3 521 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 CATSPERGQ6ZRH7 1159 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 PROCA1Q8NCQ7 364 aaPredicted RBP25.44■■□□□ 1.66
ATG4D-209ENST00000588857 CEP131Q9UPN4 1083 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 KCNH4Q9UQ05 1017 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 A0A0G2JLL6 359 aaPredicted RBP25.44■■□□□ 1.66
ATG4D-209ENST00000588857 SPTLC2O15270 562 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 MBD3O95983 291 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 SLC39A14Q15043 492 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 NONOQ15233 471 aaKnown RBP eCLIP25.44■■□□□ 1.66
ATG4D-209ENST00000588857 JAKMIP3Q5VZ66 844 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 PRRT2Q7Z6L0 340 aaPredicted RBP25.44■■□□□ 1.66
ATG4D-209ENST00000588857 SLC38A10Q9HBR0 1119 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 PNMA2Q9UL42 364 aa25.44■■□□□ 1.66
ATG4D-209ENST00000588857 COL11A1P12107 1806 aaPredicted RBP25.43■■□□□ 1.66
ATG4D-209ENST00000588857 ICAM1P05362 532 aa25.43■■□□□ 1.66
ATG4D-209ENST00000588857 ME1P48163 572 aa25.43■■□□□ 1.66
ATG4D-209ENST00000588857 TPRNQ4KMQ1 711 aa25.43■■□□□ 1.66
ATG4D-209ENST00000588857 HOXC10Q9NYD6 342 aa25.43■■□□□ 1.66
ATG4D-209ENST00000588857 ABCB11O95342 1321 aa25.43■■□□□ 1.66
ATG4D-209ENST00000588857 DSG3P32926 999 aa25.42■■□□□ 1.66
ATG4D-209ENST00000588857 TTC38Q5R3I4 469 aa25.42■■□□□ 1.66
ATG4D-209ENST00000588857 TMEM260Q9NX78 707 aa25.42■■□□□ 1.66
ATG4D-209ENST00000588857 CCPG1Q9ULG6 757 aa25.42■■□□□ 1.66
ATG4D-209ENST00000588857 MRPL11Q9Y3B7 192 aaKnown RBP25.42■■□□□ 1.66
ATG4D-209ENST00000588857 PCDHB6Q9Y5E3 794 aa25.42■■□□□ 1.66
ATG4D-209ENST00000588857 VWA5AO00534 786 aa25.41■■□□□ 1.66
ATG4D-209ENST00000588857 FOXN1O15353 648 aa25.41■■□□□ 1.66
ATG4D-209ENST00000588857 UBE2SQ16763 222 aa25.41■■□□□ 1.66
ATG4D-209ENST00000588857 KLHL40Q2TBA0 621 aa25.41■■□□□ 1.66
ATG4D-209ENST00000588857 ATG4CQ96DT6 458 aa25.41■■□□□ 1.66
ATG4D-209ENST00000588857 ZIC5Q96T25 663 aa25.41■■□□□ 1.66
ATG4D-209ENST00000588857 SLC10A3P09131 477 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 PTPAQ15257 358 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 INF2Q27J81 1249 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 TREML2Q5T2D2 321 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 MCTP2Q6DN12 878 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 FASTKD5Q7L8L6 764 aaKnown RBP25.4■■□□□ 1.66
ATG4D-209ENST00000588857 TEX2Q8IWB9 1127 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 CPXCR1Q8N123 301 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 GPT2Q8TD30 523 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 AGBL1Q96MI9 1066 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 MYPNQ86TC9 1320 aa25.4■■□□□ 1.66
ATG4D-209ENST00000588857 BMP15O95972 392 aa25.39■■□□□ 1.66
ATG4D-209ENST00000588857 TAL1P17542 331 aaPredicted RBP25.39■■□□□ 1.66
ATG4D-209ENST00000588857 CLK2P49760 499 aaKnown RBP25.39■■□□□ 1.66
ATG4D-209ENST00000588857 SNAPC2Q13487 334 aa25.39■■□□□ 1.66
ATG4D-209ENST00000588857 ZNF536O15090 1300 aa25.39■■□□□ 1.66
ATG4D-209ENST00000588857 ZNF174Q15697 407 aa25.39■■□□□ 1.65
ATG4D-209ENST00000588857 USP17L6PQ6QN14 398 aa25.39■■□□□ 1.65
ATG4D-209ENST00000588857 RASAL3Q86YV0 1011 aa25.39■■□□□ 1.65
ATG4D-209ENST00000588857 PGBD1Q96JS3 809 aa25.39■■□□□ 1.65
ATG4D-209ENST00000588857 RAVER2Q9HCJ3 691 aaKnown RBP25.39■■□□□ 1.65
ATG4D-209ENST00000588857 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.39■■□□□ 1.65
ATG4D-209ENST00000588857 ADAMTS5Q9UNA0 930 aa25.39■■□□□ 1.65
ATG4D-209ENST00000588857 MYH7BA7E2Y1 1941 aa25.38■■□□□ 1.65
ATG4D-209ENST00000588857 PPP6R2O75170 966 aa25.38■■□□□ 1.65
ATG4D-209ENST00000588857 HOXA7P31268 230 aaPredicted RBP25.38■■□□□ 1.65
ATG4D-209ENST00000588857 NEK8Q86SG6 692 aa25.38■■□□□ 1.65
ATG4D-209ENST00000588857 WNK4Q96J92 1243 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms