RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 DYNLL2Q96FJ2 89 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 CSRNP1Q96S65 589 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 UPF3BQ9BZI7 483 aaKnown RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 TMEM39BQ9GZU3 492 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 DEFB129Q9H1M3 183 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 TAF1DQ9H5J8 278 aaPredicted RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 CNNM2Q9H8M5 875 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 RRAGCQ9HB90 399 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 PI4KBQ9UBF8 816 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 SERPINB13Q9UIV8 391 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 ANAPC4Q9UJX5 808 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 ZNF232Q9UNY5 417 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 SCAF8Q9UPN6 1271 aaKnown RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 KIAA1024Q9UPX6 916 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 CYP46A1Q9Y6A2 500 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 TAF6LQ9Y6J9 622 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 COL2A1P02458 1487 aaPredicted RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 WDR90Q96KV7 1748 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 NEDD4P46934 1319 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 CNTNAP1P78357 1384 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 ATRNL1Q5VV63 1379 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 ROBO3Q96MS0 1386 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 DDTLA6NHG4 134 aaPredicted RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 B4E1Z4 1266 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 SMIM22K7EJ46 135 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 M0R2N6 131 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 RANBP6O60518 1105 aaKnown RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 PRDM1O75626 825 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 CPA1P15085 419 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 VEGFAP15692 232 aaPredicted RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 RPS6KB1P23443 525 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 MCM5P33992 734 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 PLA2G4AP47712 749 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 NEK4P51957 841 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 NFX1Q12986 1120 aaKnown RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 PTK7Q13308 1070 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 MTFR1Q15390 333 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 ADCK5Q3MIX3 580 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 CRTC2Q53ET0 693 aaPredicted RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 STOX1Q6ZVD7 989 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 C16orf86Q6ZW13 317 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 RUFY3Q7L099 469 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 FOXP4Q8IVH2 680 aaPredicted RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 ZNF444Q8N0Y2 327 aaPredicted RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 VWA5B2Q8N398 1253 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 HOOK2Q96ED9 719 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 GMCL1Q96IK5 515 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 TM6SF1Q9BZW5 370 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 EHD4Q9H223 541 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 GPAMQ9HCL2 828 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 INCENPQ9NQS7 918 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 PDRG1Q9NUG6 133 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 SCHIP1Q9P0W5 487 aaPredicted RBP6.24□□□□□ -1.41
LIG3-210ENST00000588109 SWAP70Q9UH65 585 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 PPP2R3BQ9Y5P8 575 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 PITPNM2Q9BZ72 1349 aa6.24□□□□□ -1.41
LIG3-210ENST00000588109 ERICH2A1L162 156 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 TSPY2A6NKD2 308 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 MPHOSPH10O00566 681 aaKnown RBP6.23□□□□□ -1.41
LIG3-210ENST00000588109 PRC1O43663 620 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 ORC4O43929 436 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 TSPY3P0CV98 308 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 TSPY8P0CW00 308 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 CDK8P49336 464 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 SART3Q15020 963 aaKnown RBP6.23□□□□□ -1.41
LIG3-210ENST00000588109 SUPT20HL1Q3ZLR7 823 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 NOL8Q76FK4 1167 aaKnown RBP6.23□□□□□ -1.41
LIG3-210ENST00000588109 MIGA2Q7L4E1 593 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 DHX32Q7L7V1 743 aaKnown RBP6.23□□□□□ -1.41
LIG3-210ENST00000588109 CHST3Q7LGC8 479 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 KRT26Q7Z3Y9 468 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 IQCA1Q86XH1 822 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 TSEN2Q8NCE0 465 aaKnown RBP6.23□□□□□ -1.41
LIG3-210ENST00000588109 SLC44A5Q8NCS7 719 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 TCEANC2Q96MN5 208 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 KIF2CQ99661 725 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 UBAC1Q9BSL1 405 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.23□□□□□ -1.41
LIG3-210ENST00000588109 NEUROD4Q9HD90 331 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 NMRK2Q9NPI5 230 aa6.23□□□□□ -1.41
LIG3-210ENST00000588109 HERC5Q9UII4 1024 aaKnown RBP6.23□□□□□ -1.41
LIG3-210ENST00000588109 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 ADM5C9JUS6 153 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 IFIT3O14879 490 aaKnown RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 FGRP09769 529 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 SHMT1P34896 483 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 NF2P35240 595 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 NT5C2P49902 561 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 AK2P54819 239 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 TFAP4Q01664 338 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 GABPAQ06546 454 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 BECN1Q14457 450 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 ANKRD1Q15327 319 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 CERKLQ49MI3 558 aaPredicted RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 ARSJQ5FYB0 599 aaPredicted RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 TMEM67Q5HYA8 995 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 FAM47AQ5JRC9 791 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 EFHC2Q5JST6 749 aa6.22□□□□□ -1.41
LIG3-210ENST00000588109 NBPF12Q5TAG4 269 aaPredicted RBP6.22□□□□□ -1.41
LIG3-210ENST00000588109 PRAMEF18Q5VWM3 479 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms