RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 UPF3AQ9H1J1 476 aaKnown RBP24.12■■□□□ 1.45
SHMT1-209ENST00000582653 FRMPD2Q68DX3 1309 aaPredicted RBP24.11■■□□□ 1.45
SHMT1-209ENST00000582653 MYADML2A6NDP7 307 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 DCDC2CA8MYV0 355 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 ZNF213O14771 459 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 PQBP1O60828 265 aaKnown RBP24.11■■□□□ 1.45
SHMT1-209ENST00000582653 C6orf222P0C671 652 aaPredicted RBP24.11■■□□□ 1.45
SHMT1-209ENST00000582653 NKX3-2P78367 333 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 FAAP100Q0VG06 881 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 MUM1L1Q5H9M0 696 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 C9orf50Q5SZB4 431 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 TTC14Q96N46 770 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 ZKSCAN3Q9BRR0 538 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 GPCPD1Q9NPB8 672 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 TMEM39AQ9NV64 488 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 LTBP2Q14767 1821 aa24.11■■□□□ 1.45
SHMT1-209ENST00000582653 NEDD4P46934 1319 aa24.1■■□□□ 1.45
SHMT1-209ENST00000582653 ASGR1P07306 291 aa24.1■■□□□ 1.45
SHMT1-209ENST00000582653 PCP11498 1178 aaKnown RBP24.1■■□□□ 1.45
SHMT1-209ENST00000582653 RAG1P15918 1043 aa24.1■■□□□ 1.45
SHMT1-209ENST00000582653 CDK7P50613 346 aa24.1■■□□□ 1.45
SHMT1-209ENST00000582653 IRX5P78411 483 aaPredicted RBP24.1■■□□□ 1.45
SHMT1-209ENST00000582653 GNASQ5JWF2 1037 aa24.1■■□□□ 1.45
SHMT1-209ENST00000582653 LAMA2P24043 3122 aaKnown RBP24.09■■□□□ 1.45
SHMT1-209ENST00000582653 HIP1O00291 1037 aa24.09■■□□□ 1.45
SHMT1-209ENST00000582653 ICAM1P05362 532 aa24.09■■□□□ 1.45
SHMT1-209ENST00000582653 RANBP17Q9H2T7 1088 aaKnown RBP24.09■■□□□ 1.45
SHMT1-209ENST00000582653 RNF41Q9H4P4 317 aaPredicted RBP24.09■■□□□ 1.45
SHMT1-209ENST00000582653 CYP39A1Q9NYL5 469 aa24.09■■□□□ 1.45
SHMT1-209ENST00000582653 CCPG1Q9ULG6 757 aa24.09■■□□□ 1.45
SHMT1-209ENST00000582653 TNFAIP2Q03169 654 aa24.08■■□□□ 1.45
SHMT1-209ENST00000582653 IL25Q9H293 177 aa24.08■■□□□ 1.45
SHMT1-209ENST00000582653 DDX49Q9Y6V7 483 aaKnown RBP24.08■■□□□ 1.45
SHMT1-209ENST00000582653 CTAGE5O15320 804 aa24.07■■□□□ 1.44
SHMT1-209ENST00000582653 PDHBP11177 359 aa24.07■■□□□ 1.44
SHMT1-209ENST00000582653 GSPT1P15170 499 aaKnown RBP24.07■■□□□ 1.44
SHMT1-209ENST00000582653 SYDE2Q5VT97 1194 aa24.07■■□□□ 1.44
SHMT1-209ENST00000582653 ESR2Q92731 530 aa24.07■■□□□ 1.44
SHMT1-209ENST00000582653 VTI1AQ96AJ9 217 aa24.07■■□□□ 1.44
SHMT1-209ENST00000582653 PURBQ96QR8 312 aaKnown RBP24.07■■□□□ 1.44
SHMT1-209ENST00000582653 MROH7Q68CQ1 1323 aa24.07■■□□□ 1.44
SHMT1-209ENST00000582653 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.06■■□□□ 1.44
SHMT1-209ENST00000582653 IQSEC1Q6DN90 963 aa24.06■■□□□ 1.44
SHMT1-209ENST00000582653 DSCC1Q9BVC3 393 aa24.06■■□□□ 1.44
SHMT1-209ENST00000582653 GNEQ9Y223 722 aaKnown RBP24.06■■□□□ 1.44
SHMT1-209ENST00000582653 ASTN1O14525 1302 aa24.06■■□□□ 1.44
SHMT1-209ENST00000582653 ARVCFO00192 962 aa24.05■■□□□ 1.44
SHMT1-209ENST00000582653 KDM4AO75164 1064 aa24.05■■□□□ 1.44
SHMT1-209ENST00000582653 TIMP1P01033 207 aa24.05■■□□□ 1.44
SHMT1-209ENST00000582653 SMAD3P84022 425 aaKnown RBP24.05■■□□□ 1.44
SHMT1-209ENST00000582653 ZNF543Q08ER8 600 aa24.05■■□□□ 1.44
SHMT1-209ENST00000582653 TTC22Q5TAA0 569 aa24.05■■□□□ 1.44
SHMT1-209ENST00000582653 NSMFQ6X4W1 530 aa24.05■■□□□ 1.44
SHMT1-209ENST00000582653 A0A0U1RQG5 324 aaPredicted RBP24.04■■□□□ 1.44
SHMT1-209ENST00000582653 B4E1Z4 1266 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 EPHB4P54760 987 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 FPGSQ05932 587 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 ZNF697Q5TEC3 545 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 TAPT1Q6NXT6 567 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 NOL8Q76FK4 1167 aaKnown RBP24.04■■□□□ 1.44
SHMT1-209ENST00000582653 MORC4Q8TE76 937 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 GUCD1Q96NT3 240 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 TBX21Q9UL17 535 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 PNMA2Q9UL42 364 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 Q9Y3F1 56 aa24.04■■□□□ 1.44
SHMT1-209ENST00000582653 MCM3APO60318 1980 aa24.03■■□□□ 1.44
SHMT1-209ENST00000582653 GOLGA8HP0CJ92 632 aa24.03■■□□□ 1.44
SHMT1-209ENST00000582653 SNHG28P0DPA3 235 aa24.03■■□□□ 1.44
SHMT1-209ENST00000582653 NT5C2P49902 561 aa24.03■■□□□ 1.44
SHMT1-209ENST00000582653 BAATQ14032 418 aaPredicted RBP24.03■■□□□ 1.44
SHMT1-209ENST00000582653 IMMTQ16891 758 aaKnown RBP24.03■■□□□ 1.44
SHMT1-209ENST00000582653 SEMA6BQ9H3T3 888 aa24.03■■□□□ 1.44
SHMT1-209ENST00000582653 ZSWIM5Q9P217 1185 aa24.03■■□□□ 1.44
SHMT1-209ENST00000582653 ADD3Q9UEY8 706 aaKnown RBP24.03■■□□□ 1.44
SHMT1-209ENST00000582653 LOC102724159A0A0B4J2E5 919 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 NFIBO00712 420 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 DYNC1LI2O43237 492 aaPredicted RBP24.02■■□□□ 1.44
SHMT1-209ENST00000582653 CABYRO75952 493 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 SMPD1P17405 629 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 BEX3Q00994 111 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 PWP2Q15269 919 aaKnown RBP24.02■■□□□ 1.44
SHMT1-209ENST00000582653 MFSD5Q6N075 450 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 DGKHQ86XP1 1220 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 FAM161BQ96MY7 647 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 AP5M1Q9H0R1 490 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 CPVLQ9H3G5 476 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 VTA1Q9NP79 307 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 PDGFCQ9NRA1 345 aa24.02■■□□□ 1.44
SHMT1-209ENST00000582653 EEPD1Q7L9B9 569 aa24.01■■□□□ 1.43
SHMT1-209ENST00000582653 SLC43A3Q8NBI5 491 aa24.01■■□□□ 1.43
SHMT1-209ENST00000582653 UBA5Q9GZZ9 404 aa24.01■■□□□ 1.43
SHMT1-209ENST00000582653 CTNNA3Q9UI47 895 aa24.01■■□□□ 1.43
SHMT1-209ENST00000582653 PTGS1P23219 599 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 FSCN1Q16658 493 aaKnown RBP24■■□□□ 1.43
SHMT1-209ENST00000582653 KIAA1211Q6ZU35 1233 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 TLK2Q86UE8 772 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 IQCA1Q86XH1 822 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 FAM126BQ8IXS8 530 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 PNMA1Q8ND90 353 aa24■■□□□ 1.43
SHMT1-209ENST00000582653 RNPC3Q96LT9 517 aaKnown RBP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms