RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 SSRP1Q08945 709 aaKnown RBP7.23□□□□□ -1.25
NUP88-208ENST00000574087 FYB2Q5VWT5 728 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 SLCO6A1Q86UG4 719 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 LILRA2Q8N149 483 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 NAT16Q8N8M0 369 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 JMYQ8N9B5 988 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 NPLOC4Q8TAT6 608 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 AARSD1Q9BTE6 412 aaKnown RBP7.23□□□□□ -1.25
NUP88-208ENST00000574087 GPRC5CQ9NQ84 441 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 A0A1W2PQ45 241 aaPredicted RBP7.22□□□□□ -1.25
NUP88-208ENST00000574087 A0A1W2PQY0 241 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 NRDCO43847 1150 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 PAPLNO95428 1278 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 THBDP07204 575 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 SNRPB2P08579 225 aaKnown RBP7.22□□□□□ -1.25
NUP88-208ENST00000574087 TRHRP34981 398 aaPredicted RBP7.22□□□□□ -1.25
NUP88-208ENST00000574087 TIGD5Q53EQ6 642 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 HLA-DQA1Q5Y7H0 255 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 CEP128Q6ZU80 1094 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 KSR1Q8IVT5 923 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 LILRB2Q8N423 598 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 ZBTB38Q8NAP3 1195 aaPredicted RBP7.22□□□□□ -1.25
NUP88-208ENST00000574087 KREMEN2Q8NCW0 462 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 FRS2Q8WU20 508 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 MYLIPQ8WY64 445 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 C1orf159Q96HA4 380 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 MRFAP1L1Q96HT8 127 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 C19orf44Q9H6X5 657 aa7.22□□□□□ -1.25
NUP88-208ENST00000574087 TRAV20A0A0B4J274 112 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 ARNTLO00327 626 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 BIN1O00499 593 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 TBC1D8O95759 1140 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 EFEMP2O95967 443 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 CPP00450 1065 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 FAM153BP0C7A2 387 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 FGFR1P11362 822 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 RAC2P15153 192 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 RTP1P59025 263 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 LONRF2Q1L5Z9 754 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 HSF5Q4G112 596 aaPredicted RBP7.21□□□□□ -1.26
NUP88-208ENST00000574087 SLC35F1Q5T1Q4 408 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 TMEM145Q8NBT3 493 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 SHISA4Q96DD7 197 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 JMJD8Q96S16 334 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 MMP19Q99542 508 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 IER2Q9BTL4 223 aa7.21□□□□□ -1.26
NUP88-208ENST00000574087 TRBV23OR9-2A0A075B6M9 112 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 DLX3O60479 287 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 PSPNO60542 156 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 PLS3P13797 630 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 PAMP19021 973 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 KCNJ6P48051 423 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 MAP4K2Q12851 820 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 TESK1Q15569 626 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 PRSS53Q2L4Q9 553 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 YOD1Q5VVQ6 348 aaPredicted RBP7.2□□□□□ -1.26
NUP88-208ENST00000574087 DENND5AQ6IQ26 1287 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 ABHD4Q8TB40 342 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 OSBP2Q969R2 916 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 KIRREL1Q96J84 757 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 PLCD4Q9BRC7 762 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 CLEC1BQ9P126 229 aa7.2□□□□□ -1.26
NUP88-208ENST00000574087 WTIPA6NIX2 430 aaPredicted RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 PRODHO43272 600 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 PABPC1P11940 636 aaKnown RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 JUNBP17275 347 aaPredicted RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 TAL1P17542 331 aaPredicted RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 ECI1P42126 302 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 SNX17Q15036 470 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 SLC14A2Q15849 920 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 ACBD5Q5T8D3 534 aaPredicted RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 FOXB2Q5VYV0 432 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 GALNT18Q6P9A2 607 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 NSMFQ6X4W1 530 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 NLRX1Q86UT6 975 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 THAP3Q8WTV1 239 aaPredicted RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 KCTD13Q8WZ19 329 aa7.19□□□□□ -1.26
NUP88-208ENST00000574087 CWC22Q9HCG8 908 aaKnown RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 TMEFF2Q9UIK5 374 aaPredicted RBP7.19□□□□□ -1.26
NUP88-208ENST00000574087 NPHP3-ACAD11A0A0J9YXS1 232 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 KIR3DS1Q14943 382 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 C2orf27AQ580R0 203 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 E4F1Q66K89 784 aaPredicted RBP7.18□□□□□ -1.26
NUP88-208ENST00000574087 CPNE8Q86YQ8 564 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 CCDC103Q8IW40 242 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 NLGN2Q8NFZ4 835 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 ASIC4Q96FT7 647 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 GPR160Q9UJ42 338 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 ACSL6Q9UKU0 697 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 CARMIL2Q6F5E8 1435 aa7.18□□□□□ -1.26
NUP88-208ENST00000574087 GLI1P08151 1106 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 L1CAMP32004 1257 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 LAPTM5Q13571 262 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 ZC3H12BQ5HYM0 836 aaKnown RBP7.17□□□□□ -1.26
NUP88-208ENST00000574087 MBLAC2Q68D91 279 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 IQCEQ6IPM2 695 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 ZSWIM9Q86XI8 627 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 JAMLQ86YT9 394 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 SCUBE1Q8IWY4 988 aa7.17□□□□□ -1.26
NUP88-208ENST00000574087 EXOC2Q96KP1 924 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms