RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 C2orf54Q08AI8 447 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 TTI2Q6NXR4 508 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 CABP7Q86V35 215 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 MYH13Q9UKX3 1938 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 PDS5AQ29RF7 1337 aaKnown RBP19.11■□□□□ 0.65
VPS53-215ENST00000573028 ARAP2Q8WZ64 1704 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 TXNRD1Q16881 649 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 FKBP15Q5T1M5 1219 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 FAM71BQ8TC56 605 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 PSD3Q9NYI0 1048 aa19.11■□□□□ 0.65
VPS53-215ENST00000573028 TECP42680 631 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 SLC51AQ86UW1 340 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 DUSP9Q99956 384 aaKnown RBP19.1■□□□□ 0.65
VPS53-215ENST00000573028 THAP9Q9H5L6 903 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 FAM207AQ9NSI2 230 aaPredicted RBP19.1■□□□□ 0.65
VPS53-215ENST00000573028 RPS8P62241 208 aaKnown RBP19.1■□□□□ 0.65
VPS53-215ENST00000573028 DIXDC1Q155Q3 683 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 GIMAP8Q8ND71 665 aaPredicted RBP19.1■□□□□ 0.65
VPS53-215ENST00000573028 CCDC47Q96A33 483 aaKnown RBP19.1■□□□□ 0.65
VPS53-215ENST00000573028 SLC39A2Q9NP94 309 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 CYTH3O43739 400 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 NAPAP54920 295 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 FBXO33Q7Z6M2 555 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 CCDC42Q96M95 316 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 LRWD1Q9UFC0 647 aa19.1■□□□□ 0.65
VPS53-215ENST00000573028 RRP15Q9Y3B9 282 aaKnown RBP19.1■□□□□ 0.65
VPS53-215ENST00000573028 A0A1W2PQC6 194 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 PDE2AO00408 941 aaPredicted RBP19.09■□□□□ 0.65
VPS53-215ENST00000573028 ATP2B2Q01814 1243 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 KIF5AQ12840 1032 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 SLC35G1Q2M3R5 365 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 ZNF444Q8N0Y2 327 aaPredicted RBP19.09■□□□□ 0.65
VPS53-215ENST00000573028 P2RX5Q93086 422 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 CRACR2AQ9BSW2 395 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 BCL9LQ86UU0 1499 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 PLCH1Q4KWH8 1693 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 RHOBTB3O94955 611 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 SRGNP10124 158 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 MYBL2P10244 700 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 SPA17Q15506 151 aa19.09■□□□□ 0.65
VPS53-215ENST00000573028 WDR93Q6P2C0 686 aa19.08■□□□□ 0.65
VPS53-215ENST00000573028 ANKRD13CQ8N6S4 541 aa19.08■□□□□ 0.65
VPS53-215ENST00000573028 DEF6Q9H4E7 631 aa19.08■□□□□ 0.65
VPS53-215ENST00000573028 KBTBD4Q9NVX7 518 aa19.08■□□□□ 0.65
VPS53-215ENST00000573028 CXCR5P32302 372 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 DNA2P51530 1060 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 MAP9Q49MG5 647 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 C2CD5Q86YS7 1000 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 TGFBRAP1Q8WUH2 860 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 RABEP2Q9H5N1 569 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 MMRN2Q9H8L6 949 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 MAD2L2Q9UI95 211 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 TUBBP07437 444 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 KCNB1Q14721 858 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 DYMQ7RTS9 669 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 SH3RF3Q8TEJ3 882 aaPredicted RBP19.08■□□□□ 0.64
VPS53-215ENST00000573028 SMARCAL1Q9NZC9 954 aa19.08■□□□□ 0.64
VPS53-215ENST00000573028 CACNA1SQ13698 1873 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 RASSF10A6NK89 507 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 MAPKAPK5Q8IW41 473 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 SECISBP2LQ93073 1101 aaKnown RBP19.07■□□□□ 0.64
VPS53-215ENST00000573028 TRIM9Q9C026 710 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 RASSF4Q9H2L5 321 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 MLXIPQ9HAP2 919 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 CCNE1P24864 410 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 TXKP42681 527 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 ZBED6P86452 979 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 CKAP4Q07065 602 aaKnown RBP19.07■□□□□ 0.64
VPS53-215ENST00000573028 SF3B3Q15393 1217 aaKnown RBP19.07■□□□□ 0.64
VPS53-215ENST00000573028 TBC1D9BQ66K14 1250 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 MARCH10Q8NA82 808 aaPredicted RBP19.07■□□□□ 0.64
VPS53-215ENST00000573028 EHBP1Q8NDI1 1231 aa19.07■□□□□ 0.64
VPS53-215ENST00000573028 KLRF2D3W0D1 207 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 EZH2Q15910 746 aaKnown RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 AFAP1L1Q8TED9 768 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 SMARCC1Q92922 1105 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 DHTKD1Q96HY7 919 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 MED4Q9NPJ6 270 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 NUTM2BA6NNL0 878 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 NUTM2EB1AL46 878 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 OR52Z1P0C646 297 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 GGCXP38435 758 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 PAPD7Q5XG87 772 aaKnown RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 SRLQ86TD4 932 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 NLRP3Q96P20 1036 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 GPR101Q96P66 508 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 HPCAL4Q9UM19 191 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 DISP2A7MBM2 1401 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 STXBP3O00186 592 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 C12orf60Q5U649 245 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 DGKHQ86XP1 1220 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 TMEM47Q9BQJ4 181 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 CCSER1Q9C0I3 900 aa19.06■□□□□ 0.64
VPS53-215ENST00000573028 BIN2Q9UBW5 565 aaPredicted RBP19.06■□□□□ 0.64
VPS53-215ENST00000573028 MOCS3O95396 460 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 SYF2O95926 243 aaKnown RBP19.05■□□□□ 0.64
VPS53-215ENST00000573028 IVLP07476 585 aa19.05■□□□□ 0.64
VPS53-215ENST00000573028 NAP1L1P55209 391 aaKnown RBP19.05■□□□□ 0.64
VPS53-215ENST00000573028 SLC7A5Q01650 507 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms