RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CRKP46108 304 aa11.51□□□□□ -0.57
CIITA-208ENST00000572665 ARHGEF6Q15052 776 aa11.51□□□□□ -0.57
CIITA-208ENST00000572665 PUM3Q15397 648 aaKnown RBP11.51□□□□□ -0.57
CIITA-208ENST00000572665 NBPF12Q5TAG4 269 aaPredicted RBP11.51□□□□□ -0.57
CIITA-208ENST00000572665 DZIP1LQ8IYY4 767 aaKnown RBP11.51□□□□□ -0.57
CIITA-208ENST00000572665 FBF1Q8TES7 1133 aa11.51□□□□□ -0.57
CIITA-208ENST00000572665 TEKT1Q969V4 418 aa11.51□□□□□ -0.57
CIITA-208ENST00000572665 MRIQ9BWK5 157 aa11.51□□□□□ -0.57
CIITA-208ENST00000572665 PUS3Q9BZE2 481 aaKnown RBP11.51□□□□□ -0.57
CIITA-208ENST00000572665 ZNF70Q9UC06 446 aaPredicted RBP11.51□□□□□ -0.57
CIITA-208ENST00000572665 EREGO14944 169 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 USP2O75604 605 aaPredicted RBP11.5□□□□□ -0.57
CIITA-208ENST00000572665 MAP3K6O95382 1288 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 SLC5A1P13866 664 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 SOX10P56693 466 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 GAS6Q14393 721 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 OR13H1Q8NG92 308 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 ERO1AQ96HE7 468 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 KAZALD1Q96I82 304 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 DUSP9Q99956 384 aaKnown RBP11.5□□□□□ -0.57
CIITA-208ENST00000572665 TDRD3Q9H7E2 651 aaKnown RBP11.5□□□□□ -0.57
CIITA-208ENST00000572665 CSADQ9Y600 493 aa11.5□□□□□ -0.57
CIITA-208ENST00000572665 C2CD2LO14523 706 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 CHAF1AQ13111 956 aaPredicted RBP11.49□□□□□ -0.57
CIITA-208ENST00000572665 INTS3Q68E01 1043 aaKnown RBP11.49□□□□□ -0.57
CIITA-208ENST00000572665 GPR161Q8N6U8 529 aaKnown RBP11.49□□□□□ -0.57
CIITA-208ENST00000572665 WDR66Q8TBY9 1149 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 SSH1Q8WYL5 1049 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 PMEPA1Q969W9 287 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 MRRFQ96E11 262 aaKnown RBP11.49□□□□□ -0.57
CIITA-208ENST00000572665 SMC4Q9NTJ3 1288 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 GNL3LQ9NVN8 582 aaKnown RBP11.49□□□□□ -0.57
CIITA-208ENST00000572665 KIAA1522Q9P206 1035 aaPredicted RBP11.49□□□□□ -0.57
CIITA-208ENST00000572665 PCDHAC2Q9Y5I4 1007 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 SSC5DA1L4H1 1573 aa11.49□□□□□ -0.57
CIITA-208ENST00000572665 TCP10L2B9ZVM9 353 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 CYP2E1P05181 493 aaPredicted RBP11.48□□□□□ -0.57
CIITA-208ENST00000572665 VSIG8P0DPA2 414 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 CES1P23141 567 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 GTF2A2P52657 109 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 SLFN5Q08AF3 891 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 LRRC24Q50LG9 513 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 FKBP1CQ5VVH2 108 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 DCAF15Q66K64 600 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 FAM83AQ86UY5 434 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 ANKRD44Q8N8A2 993 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 LPIN2Q92539 896 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 CCDC74AQ96AQ1 378 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 OPTNQ96CV9 577 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 CLMNQ96JQ2 1002 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 ZDHHC15Q96MV8 337 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 USP44Q9H0E7 712 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 RNF19AQ9NV58 838 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 TLR7Q9NYK1 1049 aaKnown RBP11.48□□□□□ -0.57
CIITA-208ENST00000572665 PARP2Q9UGN5 583 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 PRR12Q9ULL5 1215 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 FZD1Q9UP38 647 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 OTOFQ9HC10 1997 aa11.48□□□□□ -0.57
CIITA-208ENST00000572665 EYA2O00167 538 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 UBTFL1P0CB47 393 aaPredicted RBP11.47□□□□□ -0.57
CIITA-208ENST00000572665 BMP4P12644 408 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 MX2P20592 715 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 SOX18P35713 384 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 ZNF468Q5VIY5 522 aaPredicted RBP11.47□□□□□ -0.57
CIITA-208ENST00000572665 HHIPL2Q6UWX4 724 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 VGLL2Q8N8G2 317 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 API5Q9BZZ5 524 aaKnown RBP11.47□□□□□ -0.57
CIITA-208ENST00000572665 TRIM17Q9Y577 477 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 AK9Q5TCS8 1911 aa11.47□□□□□ -0.57
CIITA-208ENST00000572665 IGF2BP3O00425 579 aaKnown RBP eCLIP11.46□□□□□ -0.57
CIITA-208ENST00000572665 CIAO1O76071 339 aa11.46□□□□□ -0.57
CIITA-208ENST00000572665 POLR3DP05423 398 aaPredicted RBP11.46□□□□□ -0.57
CIITA-208ENST00000572665 SP3Q02447 781 aa11.46□□□□□ -0.57
CIITA-208ENST00000572665 GALNT12Q8IXK2 581 aa11.46□□□□□ -0.57
CIITA-208ENST00000572665 ZGPATQ8N5A5 531 aaKnown RBP11.46□□□□□ -0.57
CIITA-208ENST00000572665 TMEM39BQ9GZU3 492 aa11.46□□□□□ -0.57
CIITA-208ENST00000572665 ZCCHC17Q9NP64 241 aaKnown RBP11.46□□□□□ -0.57
CIITA-208ENST00000572665 KANSL3Q9P2N6 904 aa11.46□□□□□ -0.57
CIITA-208ENST00000572665 RPAP1Q9BWH6 1393 aaPredicted RBP11.45□□□□□ -0.58
CIITA-208ENST00000572665 PHF20L1A8MW92 1017 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 TERTO14746 1132 aaKnown RBP11.45□□□□□ -0.58
CIITA-208ENST00000572665 PSAPP07602 524 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 HOXD8P13378 290 aaPredicted RBP11.45□□□□□ -0.58
CIITA-208ENST00000572665 FGFR2P21802 821 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 CRHR2Q13324 411 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 VGLL4Q14135 290 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 DHX32Q7L7V1 743 aaKnown RBP11.45□□□□□ -0.58
CIITA-208ENST00000572665 OTOP1Q7RTM1 612 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 SYT9Q86SS6 491 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.45□□□□□ -0.58
CIITA-208ENST00000572665 TEPSINQ96N21 525 aa11.45□□□□□ -0.58
CIITA-208ENST00000572665 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.45□□□□□ -0.58
CIITA-208ENST00000572665 CCL15-CCL14A0A0B4J2E2 113 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 CETPP11597 493 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 VAMP1P23763 118 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 IRS1P35568 1242 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 IL15P40933 162 aaPredicted RBP11.44□□□□□ -0.58
CIITA-208ENST00000572665 DAB2P98082 770 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 PLAURQ03405 335 aa11.44□□□□□ -0.58
CIITA-208ENST00000572665 KIF22Q14807 665 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms