RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 CHST13Q8NET6 341 aa15.74■□□□□ 0.11
CCDC40-208ENST00000572270 SDR42E1Q8WUS8 393 aa15.74■□□□□ 0.11
CCDC40-208ENST00000572270 CRBNQ96SW2 442 aa15.74■□□□□ 0.11
CCDC40-208ENST00000572270 DCP1AQ9NPI6 582 aaPredicted RBP15.74■□□□□ 0.11
CCDC40-208ENST00000572270 PNMA6EA0A0J9YXQ4 647 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 ASB14A6NK59 587 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 H3BQ06 376 aaPredicted RBP15.73■□□□□ 0.11
CCDC40-208ENST00000572270 PITPNM1O00562 1244 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 GNAI2P04899 355 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 IQCF3P0C7M6 154 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 SMPD1P17405 629 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 ERVK-21P61565 698 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 AMOTL1Q8IY63 956 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 NEK9Q8TD19 979 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 POLR3EQ9NVU0 708 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 Q9Y3F1 56 aa15.73■□□□□ 0.11
CCDC40-208ENST00000572270 WDR5P61964 334 aaKnown RBP15.72■□□□□ 0.11
CCDC40-208ENST00000572270 BFSP2Q13515 415 aa15.72■□□□□ 0.11
CCDC40-208ENST00000572270 FAM47CQ5HY64 1035 aa15.72■□□□□ 0.11
CCDC40-208ENST00000572270 EP400NLQ6ZTU2 488 aa15.72■□□□□ 0.11
CCDC40-208ENST00000572270 ADHFE1Q8IWW8 467 aa15.72■□□□□ 0.11
CCDC40-208ENST00000572270 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.72■□□□□ 0.11
CCDC40-208ENST00000572270 NUP88Q99567 741 aaPredicted RBP15.72■□□□□ 0.11
CCDC40-208ENST00000572270 ANTXR1Q9H6X2 564 aa15.72■□□□□ 0.11
CCDC40-208ENST00000572270 RAVER2Q9HCJ3 691 aaKnown RBP15.72■□□□□ 0.11
CCDC40-208ENST00000572270 CTNNA3Q9UI47 895 aa15.72■□□□□ 0.11
CCDC40-208ENST00000572270 DBNLQ9UJU6 430 aaKnown RBP15.72■□□□□ 0.11
CCDC40-208ENST00000572270 CDK8P49336 464 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 CNTN2Q02246 1040 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 PKN1Q16512 942 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 PTPROQ16827 1216 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 IQSEC1Q6DN90 963 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 RAD9AQ99638 391 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 GPHNQ9NQX3 736 aaPredicted RBP15.71■□□□□ 0.11
CCDC40-208ENST00000572270 HOMER2Q9NSB8 354 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 NOD1Q9Y239 953 aa15.71■□□□□ 0.11
CCDC40-208ENST00000572270 ZDBF2Q9HCK1 2354 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 TRIOO75962 3097 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 C5orf42Q9H799 3197 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 C19orf67A6NJJ6 358 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 PTGS1P23219 599 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 TIGD5Q53EQ6 642 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 TMCO2Q7Z6W1 182 aaPredicted RBP15.7■□□□□ 0.1
CCDC40-208ENST00000572270 SUGP1Q8IWZ8 645 aaKnown RBP15.7■□□□□ 0.1
CCDC40-208ENST00000572270 FBXO22Q8NEZ5 403 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 KIFC2Q96AC6 838 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 POP1Q99575 1024 aaKnown RBP15.7■□□□□ 0.1
CCDC40-208ENST00000572270 CCDC8Q9H0W5 538 aaPredicted RBP15.7■□□□□ 0.1
CCDC40-208ENST00000572270 TLR7Q9NYK1 1049 aaKnown RBP15.7■□□□□ 0.1
CCDC40-208ENST00000572270 MUTYHQ9UIF7 546 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 COG6Q9Y2V7 657 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 BAZ2AQ9UIF9 1905 aaKnown RBP15.7■□□□□ 0.1
CCDC40-208ENST00000572270 TET1Q8NFU7 2136 aa15.7■□□□□ 0.1
CCDC40-208ENST00000572270 LINC01553A4QN01 128 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 USP17L12C9JPN9 530 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 USP17L21D6R901 530 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 MYL3P08590 195 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 IRS1P35568 1242 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 CPT1AP50416 773 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 OAZ1P54368 228 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 LRRFIP1Q32MZ4 808 aaKnown RBP15.69■□□□□ 0.1
CCDC40-208ENST00000572270 HERC4Q5GLZ8 1057 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-208ENST00000572270 IER5LQ5T953 404 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 SLC9C2Q5TAH2 1124 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 FBXO16Q8IX29 292 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-208ENST00000572270 CCDC155Q8N6L0 562 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 FAM133AQ8N9E0 248 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 MRPL38Q96DV4 380 aaKnown RBP15.69■□□□□ 0.1
CCDC40-208ENST00000572270 ACAD9Q9H845 621 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 SLC38A10Q9HBR0 1119 aa15.69■□□□□ 0.1
CCDC40-208ENST00000572270 GJB5O95377 273 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 DEFB103AP81534 67 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 PURAQ00577 322 aaKnown RBP15.68■□□□□ 0.1
CCDC40-208ENST00000572270 TTF1Q15361 905 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-208ENST00000572270 KIAA1211Q6ZU35 1233 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 C16orf86Q6ZW13 317 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 EEPD1Q7L9B9 569 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 BMP8AQ7Z5Y6 402 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 FAM9BQ8IZU0 186 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 LCORLQ8N3X6 602 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 PBXIP1Q96AQ6 731 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 PABPC5Q96DU9 382 aaKnown RBP15.68■□□□□ 0.1
CCDC40-208ENST00000572270 MTG1Q9BT17 334 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-208ENST00000572270 PDGFCQ9NRA1 345 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 ATP8A2Q9NTI2 1148 aa15.68■□□□□ 0.1
CCDC40-208ENST00000572270 F5H6K3 240 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 SURF6O75683 361 aaKnown RBP15.67■□□□□ 0.1
CCDC40-208ENST00000572270 PDE6AP16499 860 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 KLRC3Q07444 240 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 TCF15Q12870 199 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 NBPF20Q3BBV1 942 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 BRDTQ58F21 947 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-208ENST00000572270 NFRKBQ6P4R8 1299 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 DDRGK1Q96HY6 314 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 IRF2BPLQ9H1B7 796 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 VTA1Q9NP79 307 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 ZNF532Q9HCE3 1301 aa15.67■□□□□ 0.1
CCDC40-208ENST00000572270 SOWAHBA6NEL2 793 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 NDUFB10O96000 172 aa15.66■□□□□ 0.1
CCDC40-208ENST00000572270 C12orf60Q5U649 245 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms