RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 PRAMEF27A3QJZ7 478 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 TMPRSS2O15393 492 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 ADH5P11766 374 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 FBLN1P23142 703 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 ZNF165P49910 485 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 ZFYVE27Q5T4F4 411 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 REC114Q7Z4M0 266 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 FMNL3Q8IVF7 1028 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 GPATCH11Q8N954 259 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 PNISRQ8TF01 805 aaKnown RBP7.71□□□□□ -1.18
VPS53-212ENST00000572259 JDP2Q8WYK2 163 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 SLKQ9H2G2 1235 aaPredicted RBP7.71□□□□□ -1.18
VPS53-212ENST00000572259 ATXN3LQ9H3M9 355 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 PIDD1Q9HB75 910 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 EFR3BQ9Y2G0 817 aa7.71□□□□□ -1.18
VPS53-212ENST00000572259 THSD7AQ9UPZ6 1657 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 PARP4Q9UKK3 1724 aaKnown RBP7.7□□□□□ -1.18
VPS53-212ENST00000572259 GAS2O43903 313 aaKnown RBP7.7□□□□□ -1.18
VPS53-212ENST00000572259 PDGFRBP09619 1106 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 PAX3P23760 479 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 NOS3P29474 1203 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 TNNT2P45379 298 aaPredicted RBP7.7□□□□□ -1.18
VPS53-212ENST00000572259 ASPAP45381 313 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 CDK8P49336 464 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 ERVK-24P63145 666 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 PDE4BQ07343 736 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 SERINC3Q13530 473 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 COL9A2Q14055 689 aaPredicted RBP7.7□□□□□ -1.18
VPS53-212ENST00000572259 ADGRE1Q14246 886 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 MBTPS1Q14703 1052 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 SLITRK4Q8IW52 837 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 PRPF38AQ8NAV1 312 aaKnown RBP7.7□□□□□ -1.18
VPS53-212ENST00000572259 RAPGEF4Q8WZA2 1011 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 RELTQ969Z4 430 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 SEC16BQ96JE7 1060 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 RPS6KC1Q96S38 1066 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS53-212ENST00000572259 BRMS1Q9HCU9 246 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 GINM1Q9NU53 330 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 CRIM1Q9NZV1 1036 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 HIF3AQ9Y2N7 669 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 INSRP06213 1382 aa7.7□□□□□ -1.18
VPS53-212ENST00000572259 ANKRD26Q9UPS8 1709 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 GFRA2O00451 464 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 GRIN3BO60391 1043 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 ATF4P18848 351 aaPredicted RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 NASPP49321 788 aaPredicted RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 USP11P51784 963 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 ETF1P62495 437 aaKnown RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 CCSAPQ6IQ19 270 aaPredicted RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 GK5Q6ZS86 529 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 CYFIP1Q7L576 1253 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 TXNRD3Q86VQ6 643 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 CPLX3Q8WVH0 158 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 DCAF5Q96JK2 942 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 C8orf48Q96LL4 319 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 FANCD2OSQ96PS1 177 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 SSU72Q9NP77 194 aaKnown RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 BSDC1Q9NW68 430 aaPredicted RBP7.69□□□□□ -1.18
VPS53-212ENST00000572259 POLKQ9UBT6 870 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 PCDHGC5Q9Y5F6 944 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 TACC3Q9Y6A5 838 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 WASHC2AQ641Q2 1341 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 OVOS2A0A0G2JMS6 1433 aa7.69□□□□□ -1.18
VPS53-212ENST00000572259 KRBA1A5PL33 1030 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 RNGTTO60942 597 aaKnown RBP7.68□□□□□ -1.18
VPS53-212ENST00000572259 TIAF1O95411 115 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 SSBP05455 408 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS53-212ENST00000572259 PREPP48147 710 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 PPM1JQ5JR12 505 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 ODR4Q5SWX8 454 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 FBXW10Q5XX13 1052 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 CDC37L1Q7L3B6 337 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 FERD3LQ96RJ6 166 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 PRDM10Q9NQV6 1147 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 DISC1Q9NRI5 854 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 RGPD1P0DJD0 1748 aa7.68□□□□□ -1.18
VPS53-212ENST00000572259 WNK3Q9BYP7 1800 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 FANCGO15287 622 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 PLCG1P19174 1290 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 HMGB2P26583 209 aaKnown RBP7.67□□□□□ -1.18
VPS53-212ENST00000572259 GRK4P32298 578 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 AMPD3Q01432 767 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 TTLL4Q14679 1199 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 CC2D1BQ5T0F9 858 aaKnown RBP7.67□□□□□ -1.18
VPS53-212ENST00000572259 DEFB132Q7Z7B7 95 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 REXO1Q8N1G1 1221 aaKnown RBP7.67□□□□□ -1.18
VPS53-212ENST00000572259 C2CD4AQ8NCU7 369 aaPredicted RBP7.67□□□□□ -1.18
VPS53-212ENST00000572259 RNF214Q8ND24 703 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 ZNF507Q8TCN5 953 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 RNPC3Q96LT9 517 aaKnown RBP7.67□□□□□ -1.18
VPS53-212ENST00000572259 CRBNQ96SW2 442 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 YIPF2Q9BWQ6 316 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 WNT10AQ9GZT5 417 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 PCDHB14Q9Y5E9 798 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 ACTL7BQ9Y614 415 aa7.67□□□□□ -1.18
VPS53-212ENST00000572259 C1QTNF9BB2RNN3 333 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 PGRP06401 933 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 HCLS1P14317 486 aaPredicted RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms