RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 RASSF7Q02833 373 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 FAM114A1Q8IWE2 563 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 ADSSL1Q8N142 457 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 COG1Q8WTW3 980 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 HDAC7Q8WUI4 952 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 LRRC1Q9BTT6 524 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 BIN2Q9UBW5 565 aaPredicted RBP16.14■□□□□ 0.17
VPS35-210ENST00000568784 SLIT3O75094 1523 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 EIF4A3P38919 411 aaKnown RBP16.13■□□□□ 0.17
VPS35-210ENST00000568784 STK4Q13043 487 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 RRP36Q96EU6 259 aaKnown RBP16.13■□□□□ 0.17
VPS35-210ENST00000568784 UBXN6Q9BZV1 441 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 CCDC87Q9NVE4 849 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 ANKIB1Q9P2G1 1089 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 FER1L4A9Z1Z3 1794 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 PDE2AO00408 941 aaPredicted RBP16.13■□□□□ 0.17
VPS35-210ENST00000568784 KLRK1P26718 216 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 MNAT1P51948 309 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 MECOMQ03112 1051 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 ITIH6Q6UXX5 1313 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 DDAH1O94760 285 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 HPDP32754 393 aaPredicted RBP16.13■□□□□ 0.17
VPS35-210ENST00000568784 ANKRD40Q6AI12 368 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 TRAPPC11Q7Z392 1133 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 P2RX5Q93086 422 aa16.13■□□□□ 0.17
VPS35-210ENST00000568784 SEC63Q9UGP8 760 aaKnown RBP16.13■□□□□ 0.17
VPS35-210ENST00000568784 DMGDHQ9UI17 866 aaKnown RBP16.13■□□□□ 0.17
VPS35-210ENST00000568784 BICDL2A1A5D9 508 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 NDUFAB1O14561 156 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 ATP2C2O75185 946 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 KRT18P05783 430 aaKnown RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 EEF1GP26641 437 aaKnown RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 IL6STP40189 918 aaPredicted RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 MAPKAPK5Q8IW41 473 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 UBA5Q9GZZ9 404 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 PSD3Q9NYI0 1048 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 PFKFB3Q16875 520 aaPredicted RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 TXNRD1Q16881 649 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 SH2D3CQ8N5H7 860 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 NOP2P46087 812 aaKnown RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 ERFEQ4G0M1 354 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 CT47A1Q5JQC4 288 aaPredicted RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 NELFCDQ8IXH7 590 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 KLHL7Q8IXQ5 586 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 CAPS2Q9BXY5 557 aa16.12■□□□□ 0.17
VPS35-210ENST00000568784 DCP1AQ9NPI6 582 aaPredicted RBP16.12■□□□□ 0.17
VPS35-210ENST00000568784 PPFIA4O75335 1185 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 PDCLQ13371 301 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 ODF2Q5BJF6 829 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.11■□□□□ 0.17
VPS35-210ENST00000568784 PCDHA4Q9UN74 947 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 ZBED6P86452 979 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 NKX1-1Q15270 411 aaPredicted RBP16.11■□□□□ 0.17
VPS35-210ENST00000568784 IRF2BP1Q8IU81 584 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 TGFBRAP1Q8WUH2 860 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 PPM1EQ8WY54 764 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 CAPN11Q9UMQ6 739 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 CAPN6Q9Y6Q1 641 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 HIBADHP31937 336 aaKnown RBP16.11■□□□□ 0.17
VPS35-210ENST00000568784 AMPD3Q01432 767 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 DIXDC1Q155Q3 683 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 CELF1Q92879 486 aaKnown RBP16.11■□□□□ 0.17
VPS35-210ENST00000568784 SLAIN2Q9P270 581 aa16.11■□□□□ 0.17
VPS35-210ENST00000568784 FTCDO95954 541 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 TNNI2P48788 182 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 WDR59Q6PJI9 974 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 CCDC155Q8N6L0 562 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 MS4A14Q96JA4 679 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 PACSIN2Q9UNF0 486 aaPredicted RBP16.1■□□□□ 0.17
VPS35-210ENST00000568784 TRAF5O00463 557 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 VAV2P52735 878 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 AMPD2Q01433 879 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 RAPGEF1Q13905 1077 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 ZNF34Q8IZ26 560 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 SMCO2A6NFE2 343 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 KIF11P52732 1056 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 CACNB1Q02641 598 aaPredicted RBP16.1■□□□□ 0.17
VPS35-210ENST00000568784 CFAP58Q5T655 872 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 TRIM58Q8NG06 486 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 RIOK1Q9BRS2 568 aaKnown RBP16.1■□□□□ 0.17
VPS35-210ENST00000568784 TMCO5BA8MYB1 307 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 CCNE1P24864 410 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 TRAPPC10P48553 1259 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 GUCY2DQ02846 1103 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 FUT2Q10981 343 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 PROCA1Q8NCQ7 364 aaPredicted RBP16.1■□□□□ 0.17
VPS35-210ENST00000568784 NUP58Q9BVL2 599 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 ZNF652Q9Y2D9 606 aa16.1■□□□□ 0.17
VPS35-210ENST00000568784 KLRF2D3W0D1 207 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 PSMD14O00487 310 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 MAGEA9P43362 315 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 USP17L2Q6R6M4 530 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 PCDHA13Q9Y5I0 950 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 CCNI2Q6ZMN8 369 aaPredicted RBP16.09■□□□□ 0.17
VPS35-210ENST00000568784 SV2BQ7L1I2 683 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 GPR101Q96P66 508 aaPredicted RBP16.09■□□□□ 0.17
VPS35-210ENST00000568784 JRKLQ9Y4A0 524 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 MYH8P13535 1937 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 MYH15Q9Y2K3 1946 aa16.09■□□□□ 0.17
VPS35-210ENST00000568784 NWD2Q9ULI1 1742 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms