RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-211	ENST00000566550	FAM83G	A6ND36	823 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NFKBIE	O00221	500 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	APAF1	O14727	1248 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	DNAJA2	O60884	412 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ABLIM3	O94929	683 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SNUPN	O95149	360 aa	Known RBP	4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PGR	P06401	933 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MYL3	P08590	195 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PF4V1	P10720	104 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	IARS	P41252	1262 aa	Known RBP	4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MORC3	Q14149	939 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	DHCR24	Q15392	516 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SLC4A8	Q2Y0W8	1093 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ARHGAP29	Q52LW3	1261 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	COBLL1	Q53SF7	1204 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FAM83B	Q5T0W9	1011 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	IQSEC1	Q6DN90	963 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ERAP2	Q6P179	960 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ADAMTSL4	Q6UY14	1074 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NSMF	Q6X4W1	530 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SCUBE1	Q8IWY4	988 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FBXL6	Q8N531	539 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TAB3	Q8N5C8	712 aa	Predicted RBP	4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	LRRN4CL	Q8ND94	238 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	OR2W6P	Q8NHA6	318 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SLC7A14	Q8TBB6	771 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PARD3B	Q8TEW8	1205 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CLIP3	Q96DZ5	547 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FGD4	Q96M96	766 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SLC38A3	Q99624	504 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PBX4	Q9BYU1	374 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	IFT22	Q9H7X7	185 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SLC52A2	Q9HAB3	445 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	AS3MT	Q9HBK9	375 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SWAP70	Q9UH65	585 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZBTB21	Q9ULJ3	1066 aa		4.17	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PRAMEF27	A3QJZ7	478 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SLC22A31	A6NKX4	558 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550		M0R2C6	588 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CYP26A1	O43174	497 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NBN	O60934	754 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RFPL1	O75677	317 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FARP2	O94887	1054 aa	Predicted RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FBXO21	O94952	628 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	B3GALT4	O96024	378 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ITGAV	P06756	1048 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NAT2	P11245	290 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PABPC1	P11940	636 aa	Known RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TRIM27	P14373	513 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PTPRA	P18433	802 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MAP4	P27816	1152 aa	Known RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SERPINB3	P29508	390 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CDC25B	P30305	580 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	GRIA2	P42262	883 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ARL4D	P49703	201 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	IL2	P60568	153 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	GRM3	Q14832	879 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SART3	Q15020	963 aa	Known RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZNF423	Q2M1K9	1284 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	KRTAP19-4	Q3LI73	84 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CFAP100	Q494V2	611 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZNF648	Q5T619	568 aa	Predicted RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PIK3R6	Q5UE93	754 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CXorf57	Q6NSI4	855 aa	Known RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	C1orf228	Q6PIY5	440 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TXNDC11	Q6PKC3	985 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PAOX	Q6QHF9	649 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SKAP1	Q86WV1	359 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZNF227	Q86WZ6	799 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	KSR1	Q8IVT5	923 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CPXCR1	Q8N123	301 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ENAH	Q8N8S7	591 aa	Predicted RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FLCN	Q8NFG4	579 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PJA1	Q8NG27	643 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	BSND	Q8WZ55	320 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	WNT8B	Q93098	351 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ELMO3	Q96BJ8	720 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PLPPR2	Q96GM1	343 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SCLT1	Q96NL6	688 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MTA3	Q9BTC8	594 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SARG	Q9BW04	601 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	KRTAP4-11	Q9BYQ6	195 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TRIM39	Q9HCM9	518 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CASS4	Q9NQ75	786 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	KCNK4	Q9NYG8	393 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	APEX2	Q9UBZ4	518 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SAP30BP	Q9UHR5	308 aa	Known RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ANAPC4	Q9UJX5	808 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RCAN3	Q9UKA8	241 aa		4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZNF214	Q9UL59	606 aa	Predicted RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FRMPD2	Q68DX3	1309 aa	Predicted RBP	4.16	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ANKRD34B	A5PLL1	514 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	CCER2	I3L3R5	266 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	TBX1	O43435	398 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	SLC26A4	O43511	780 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	ZNF500	O60304	480 aa	Predicted RBP	4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	PRKD3	O94806	890 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	EPHX1	P07099	455 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	IGFALS	P35858	605 aa		4.15	□□□□□ -1.75
HERPUD1-211	ENST00000566550	FLT3	P36888	993 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms