RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 NYAP2Q9P242 653 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 SEC63Q9UGP8 760 aaKnown RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 NOL7Q9UMY1 257 aaKnown RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 KCNJ14Q9UNX9 436 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 CNTNAP5Q8WYK1 1306 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 FSD2A1L4K1 749 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 POTEFA5A3E0 1075 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 KIF28PB7ZC32 967 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 PPP6R2O75170 966 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 GRK4P32298 578 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 USP14P54578 494 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 UBXN2AP68543 259 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 ATP2B2Q01814 1243 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 PRKCZQ05513 592 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 SLC39A14Q15043 492 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 GPATCH4Q5T3I0 446 aaKnown RBP10.23□□□□□ -0.77
VPS39-207ENST00000563692 USP17L2Q6R6M4 530 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 LRSAM1Q6UWE0 723 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 CCDC73Q6ZRK6 1079 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 STAG2Q8N3U4 1231 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 SLAIN1Q8ND83 568 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 SH3TC2Q8TF17 1288 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 GTF3C2Q8WUA4 911 aaPredicted RBP10.23□□□□□ -0.77
VPS39-207ENST00000563692 ASCC2Q9H1I8 757 aaPredicted RBP10.23□□□□□ -0.77
VPS39-207ENST00000563692 VPS54Q9P1Q0 977 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 MTMR7Q9Y216 660 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 CLIC4Q9Y696 253 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 MYH1P12882 1939 aa10.23□□□□□ -0.77
VPS39-207ENST00000563692 A0A1W2PQ27 194 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 A0A1W2PQ64 194 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 A0A1W2PQD8 194 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 SYCE3A1L190 88 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 hCG_1984214I3L0E3 225 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 BMP15O95972 392 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 HOXA7P31268 230 aaPredicted RBP10.22□□□□□ -0.77
VPS39-207ENST00000563692 ZNF713Q8N859 430 aaPredicted RBP10.22□□□□□ -0.77
VPS39-207ENST00000563692 ANP32BQ92688 251 aaKnown RBP10.22□□□□□ -0.77
VPS39-207ENST00000563692 PGBD1Q96JS3 809 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.22□□□□□ -0.77
VPS39-207ENST00000563692 SYNPO2Q9UMS6 1093 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 PCDHA7Q9UN72 937 aa10.22□□□□□ -0.77
VPS39-207ENST00000563692 FOCADQ5VW36 1801 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 KIAA0100Q14667 2235 aaKnown RBP10.21□□□□□ -0.77
VPS39-207ENST00000563692 hCG_1642624A0A1W2PR95 340 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 CTAGE5O15320 804 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 ADCY3O60266 1144 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 GOLGA8HP0CJ92 632 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 SNHG28P0DPA3 235 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 PDHBP11177 359 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 CTGFP29279 349 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 GNA11P29992 359 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 FLT3LGP49771 235 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 ZYXQ15942 572 aaKnown RBP10.21□□□□□ -0.77
VPS39-207ENST00000563692 SHROOM1Q2M3G4 852 aaPredicted RBP10.21□□□□□ -0.77
VPS39-207ENST00000563692 GPRC5AQ8NFJ5 357 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 DCAF4Q8WV16 495 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 PIBF1Q8WXW3 757 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 NUP62CLQ9H1M0 184 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 TSPY26PQ9H489 355 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 RIOX1Q9H6W3 641 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 GRPEL1Q9HAV7 217 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 VAT1LQ9HCJ6 419 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 C6orf50Q9HD87 102 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 BARHL2Q9NY43 387 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 PCDHA4Q9UN74 947 aa10.21□□□□□ -0.77
VPS39-207ENST00000563692 DDX60LQ5H9U9 1706 aaKnown RBP10.21□□□□□ -0.78
VPS39-207ENST00000563692 USP17L15C9J2P7 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L13C9JLJ4 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L11C9JVI0 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L18D6R9N7 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L22D6RA61 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L17D6RBQ6 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L19D6RCP7 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L20D6RJB6 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 KINO60870 393 aaKnown RBP10.2□□□□□ -0.78
VPS39-207ENST00000563692 CUTAO60888 179 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 EEF2P13639 858 aaKnown RBP10.2□□□□□ -0.78
VPS39-207ENST00000563692 EN2P19622 333 aaPredicted RBP10.2□□□□□ -0.78
VPS39-207ENST00000563692 CMA1P23946 247 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 TRAPPC10P48553 1259 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 HERVK_113P62684 666 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 JAG1P78504 1218 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 ICA1Q05084 483 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 ZNF543Q08ER8 600 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 USP17L24Q0WX57 530 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 IRF5Q13568 498 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 CCDC96Q2M329 555 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 PRPF38BQ5VTL8 546 aaKnown RBP10.2□□□□□ -0.78
VPS39-207ENST00000563692 HEATR3Q7Z4Q2 680 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 BLIDQ8IZY5 108 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 LRRC47Q8N1G4 583 aaKnown RBP10.2□□□□□ -0.78
VPS39-207ENST00000563692 MRPS27Q92552 414 aaKnown RBP10.2□□□□□ -0.78
VPS39-207ENST00000563692 CDK5RAP2Q96SN8 1893 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 FTOQ9C0B1 505 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS39-207ENST00000563692 KIAA1683Q9H0B3 1180 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 TNMDQ9H2S6 317 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 SH2D4AQ9H788 454 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 ARHGEF10LQ9HCE6 1279 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 DACT1Q9NYF0 836 aa10.2□□□□□ -0.78
VPS39-207ENST00000563692 GABRQQ9UN88 632 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms